EST details — SGN-E399061
| Search information |
| Request: 399061 | Match: SGN-E399061 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172784 | Clone name: TUS-14-G22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172784 is on microarray TOM1 spot ID 1-1-3.3.20.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10941 [cLEC-6-L14] | Trace: SGN-T24228 | EST: SGN-E202567 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172784 [TUS-14-G22] | Trace: SGN-T195235 | EST: SGN-E393909 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172784 [TUS-14-G22] | Trace: SGN-T195383 | EST: SGN-E394057 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172784 [TUS-14-G22] | Trace: SGN-T195384 | EST: SGN-E394058 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172784 [TUS-14-G22] | Trace: SGN-T200213 | EST: SGN-E399062 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399061 | Length: 615 bp (859 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399061 [] (trimmed)
AAGGTAATAATTATTTGTTAACTGACATTTTTCTCATTCCACCTTAATTATATAAGACACCAAAGTATCAAAAGACATTTTGGTTATTTTTCTTC
TTCTCCACAATAATCTACTAATATTTGATGCTGCAAAGTTCCCTACATTTAACTCTTAACATAATCAAATATTTCACGAGTACACCATATCTGCA
AGCTACCGTATTTTCTTAAATTTTAAGAGCAAACCAACTAAAAGGAGAAAGGAATGACATCAATAACTAACTAACACTGGAAGGAACAGTGACTA
ATTTTGAAGCAACAATATCTTCTCTGACTCAACGATAGCTGCGGTATGCTGGGCTGTACATGCAGCTCTCTGCATATGCGACTAGGTCCTTGGGC
TGCGGTAGACGAGTGGCCAAACCTAATTCATATGCTTTAGCTGCCACTTTGGCAGCAATATGCGCTGAAATCTTTCTTATGTTGGAAAAGGGGGG
GGGGGTGAGTCCCTTTTCAAAGTTCTCTTGAGAAACTTGCTCCGCTAAAACTTCCGAGGCTACCAGGAGCATGTCATCGTGGACACGAATTGCAC
CAAAGATTATCAGTCCTAGACCCAACCCCAGGGAAAATATAATGC
TTCTCCACAATAATCTACTAATATTTGATGCTGCAAAGTTCCCTACATTTAACTCTTAACATAATCAAATATTTCACGAGTACACCATATCTGCA
AGCTACCGTATTTTCTTAAATTTTAAGAGCAAACCAACTAAAAGGAGAAAGGAATGACATCAATAACTAACTAACACTGGAAGGAACAGTGACTA
ATTTTGAAGCAACAATATCTTCTCTGACTCAACGATAGCTGCGGTATGCTGGGCTGTACATGCAGCTCTCTGCATATGCGACTAGGTCCTTGGGC
TGCGGTAGACGAGTGGCCAAACCTAATTCATATGCTTTAGCTGCCACTTTGGCAGCAATATGCGCTGAAATCTTTCTTATGTTGGAAAAGGGGGG
GGGGGTGAGTCCCTTTTCAAAGTTCTCTTGAGAAACTTGCTCCGCTAAAACTTCCGAGGCTACCAGGAGCATGTCATCGTGGACACGAATTGCAC
CAAAGATTATCAGTCCTAGACCCAACCCCAGGGAAAATATAATGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399061] | SGN-U577757 | Tomato 200607 | Build 2 | 183 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195383 [Download][View] | Facility Assigned ID: FA0AAD2BD11FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0072 | Quality Trim Threshold: 14.5 |
Working
