EST details — SGN-E399157
| Search information |
| Request: 399157 | Match: SGN-E399157 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183531 | Clone name: TUS-42-G17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183531 is on microarray TOM1 spot ID 1-1-8.3.1.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14725 [cLEC-8-G10] | Trace: SGN-T25135 | EST: SGN-E200046 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183531 [TUS-42-G17] | Trace: SGN-T194935 | EST: SGN-E393609 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183531 [TUS-42-G17] | Trace: SGN-T194935 | EST: SGN-E399156 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183531 [TUS-42-G17] | Trace: SGN-T195488 | EST: SGN-E394162 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183531 [TUS-42-G17] | Trace: SGN-T195952 | EST: SGN-E394626 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183531 [TUS-42-G17] | Trace: SGN-T199405 | EST: SGN-E398079 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399157 | Length: 679 bp (926 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399157 [] (trimmed)
CTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGA
TGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGC
ACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCT
TCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTAT
CCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTT
GTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAA
ATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAACCCCTTTGTTTGTTTTTGTTTGATGTACTATTTAATAGTTCTAGTCTTT
TAATGTAAAATCTT
TGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGC
ACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCT
TCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTAT
CCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTT
GTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAA
ATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAACCCCTTTGTTTGTTTTTGTTTGATGTACTATTTAATAGTTCTAGTCTTT
TAATGTAAAATCTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399157] | SGN-U584262 | Tomato 200607 | Build 2 | 17 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195952 [Download][View] | Facility Assigned ID: FA0AAD30AD09RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.928 | Expected Error Rate: 0.0104 | Quality Trim Threshold: 12.5 |
Working
