EST details — SGN-E399230
| Search information |
| Request: 399230 | Match: SGN-E399230 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183434 | Clone name: TUS-42-C16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183434 is on microarray TOM1 spot ID 1-1-1.3.1.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C99133 [cLEZ-16-C16] | Trace: SGN-T123100 | EST: SGN-E311098 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183434 [TUS-42-C16] | Trace: SGN-T196009 | EST: SGN-E394683 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183434 [TUS-42-C16] | Trace: SGN-T196127 | EST: SGN-E394801 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183434 [TUS-42-C16] | Trace: SGN-T199418 | EST: SGN-E398092 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399230 | Length: 772 bp (916 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399230 [] (trimmed)
TGTCAAGCCCACTAGAGATAGATACTTCATTTTCACATTCCAATTTGTTGTTTTTGGAAGATGAATCATCATGGAGTAATACTCATGATCCATTT
GTTGATATTGATGAATATCTACCAATAATTATACCATGTAATGATGAAGAAATAGTAGTAGAATCCTCAAACGCTAGTACTACAACAACAACAAC
AACAACATCAAAAGTAGCAAGTATCCAAAATATTCATCATGATCAAGAAGAGGTAACATCCATAGAGAAAAAACATGAAGATGATCAAGAAAAAC
ATTATATTGGAGTTAGAAAGAGGCCATGGGGTAAATATGCATCAGAAATTAGGGATTCAACGCGTAATGGAATTAGGGTTTGGTTAGGAACATTT
GATACTGCTGAAGAAGCTGCTTTAGCTTATGATCAAGCCGCATTATCAATGAGGGGTCCTTGGTCTCTACTCAATTTTCCAATGGAACATGTTAA
AAAATCTCTTGAAAATATTGAGTATTCTTGTAAAGATGGATTATCTCCAGCTGCTGTTTTAAAAGCTACTCATAAAACTAGAAGAGTCAAGCACA
AGAGAAGTAGTAGAAAGAAGAAGAATGAGAATTTGGAAAATGTTTTTGTTTTTCAAGACTTGGGAGTTGAATTATTAGAAGAGCTTTTAATGACT
TCATCATAGGAATGTTTATTATATTCTTCGTGTCGAAAATACTAAGTTCAGTTTTCGTGGGAGATAATAATCAAGATCGCAATGTACGAGTCTCT
TTTTTTTCTTTT
GTTGATATTGATGAATATCTACCAATAATTATACCATGTAATGATGAAGAAATAGTAGTAGAATCCTCAAACGCTAGTACTACAACAACAACAAC
AACAACATCAAAAGTAGCAAGTATCCAAAATATTCATCATGATCAAGAAGAGGTAACATCCATAGAGAAAAAACATGAAGATGATCAAGAAAAAC
ATTATATTGGAGTTAGAAAGAGGCCATGGGGTAAATATGCATCAGAAATTAGGGATTCAACGCGTAATGGAATTAGGGTTTGGTTAGGAACATTT
GATACTGCTGAAGAAGCTGCTTTAGCTTATGATCAAGCCGCATTATCAATGAGGGGTCCTTGGTCTCTACTCAATTTTCCAATGGAACATGTTAA
AAAATCTCTTGAAAATATTGAGTATTCTTGTAAAGATGGATTATCTCCAGCTGCTGTTTTAAAAGCTACTCATAAAACTAGAAGAGTCAAGCACA
AGAGAAGTAGTAGAAAGAAGAAGAATGAGAATTTGGAAAATGTTTTTGTTTTTCAAGACTTGGGAGTTGAATTATTAGAAGAGCTTTTAATGACT
TCATCATAGGAATGTTTATTATATTCTTCGTGTCGAAAATACTAAGTTCAGTTTTCGTGGGAGATAATAATCAAGATCGCAATGTACGAGTCTCT
TTTTTTTCTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399230] | SGN-U574873 | Tomato 200607 | Build 2 | 14 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196009 [Download][View] | Facility Assigned ID: FA0AAD30BB08RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.942 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |
Working
