EST details — SGN-E399238

Search information 
Request: 399238Match: SGN-E399238
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183468Clone name: TUS-42-E2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183468 is on microarray TOM1 spot ID 1-1-7.1.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C80626 [cLET-12-O10] Trace: SGN-T105678 EST: SGN-E293215 Direction: 5' Facility: TIGR
Clone: SGN-C183468 [TUS-42-E2] Trace: SGN-T196013 EST: SGN-E394687 Direction: 5' Facility: INRA
Clone: SGN-C183468 [TUS-42-E2] Trace: SGN-T196013 EST: SGN-E399239 Direction: 5' Facility: INRA
Clone: SGN-C183468 [TUS-42-E2] Trace: SGN-T196129 EST: SGN-E394803 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399238Length: 293 bp (953 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E399238 [] (trimmed) GAAAAATAAAAATAATATCAACAATTCAATTAATATGAAATAATAGTTATATATAAATATATATGATTTCACCCGTTCTCCTAAAAGGAAAAAAA
AAACAAAAAGGAAATGTGAAGTGTGATCATGAAAATTATGGGGAATGCACATGTGGATTAAATTTTTAGCACCAATAACGGTGCTGACCTGGCAA
TACAATTAATCCAAAAAAAAGAAAAGATTATCCCGAATTTTAGGCGGGTAAAAAATTCCGCTAAATTCTGCAAAAAAAAAGAAATTTTCGACGGC
CCAGTGGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399238] SGN-U583916 Tomato 200607 Build 2 8 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200283 [Download][View] Facility Assigned ID: FA0AAD30BC01FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.884 Expected Error Rate: 0.0158 Quality Trim Threshold: 14.5