EST details — SGN-E399239
| Search information |
| Request: 399239 | Match: SGN-E399239 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183468 | Clone name: TUS-42-E2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183468 is on microarray TOM1 spot ID 1-1-7.1.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C80626 [cLET-12-O10] | Trace: SGN-T105678 | EST: SGN-E293215 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183468 [TUS-42-E2] | Trace: SGN-T196013 | EST: SGN-E394687 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183468 [TUS-42-E2] | Trace: SGN-T196129 | EST: SGN-E394803 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183468 [TUS-42-E2] | Trace: SGN-T200283 | EST: SGN-E399238 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399239 | Length: 639 bp (917 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399239 [] (trimmed)
GAAAAATTTTGAAGGTTATAATTGGGATTAGGGTTAGGGTTGAATCGAGTGTGGAGCTGAGAATGAGCAGTGGGATTAGTTGTATATTTCCTTTT
ATAGGCATTCTGTTTATCCCAGTGCGGTTCATTTCTGCCGGTTATAACAGCTGATGCCATAGAAGGTTACGGGGTTTAAAAATAGCTTGAAAACT
CCGCCAATTAATCTCCGGCGAGAAAATGGCGGGAGCCCATAACTGTATTATTGCCGGGAATATTGAATTGCCGCCAGGAGAAAATTAAAAAAAAA
AAAAAGAGCGAGAAAGTATAAGAAATTAGTATTTCTTCACCGAATGAGAAATGGAGAAGAAGGTAAGGGTTTCAAATGAACCTCTTGAACCTGAG
TGATGAAATTTTTCAAGGCCACGGATCTCCTCTTAAAGGCAATAAGATCTGCCCCGTTTCTGTTTCGGGCAGTTTATGAGCCCTCGATTGGAAAT
CATAGGGTTGAGATTTATCATTTACGCTGCCCGGTGTGATGACCTTGCCCACCTGTCATGGACGGCCTAGATTTACGTTACGTACACGTGGGGAT
AGATAAAGGCAACTGTTTGTGCCTTTTGGTGGGAAAAGTAAATTTTGGTTTCAAGTTTTCGGAGATTAC
ATAGGCATTCTGTTTATCCCAGTGCGGTTCATTTCTGCCGGTTATAACAGCTGATGCCATAGAAGGTTACGGGGTTTAAAAATAGCTTGAAAACT
CCGCCAATTAATCTCCGGCGAGAAAATGGCGGGAGCCCATAACTGTATTATTGCCGGGAATATTGAATTGCCGCCAGGAGAAAATTAAAAAAAAA
AAAAAGAGCGAGAAAGTATAAGAAATTAGTATTTCTTCACCGAATGAGAAATGGAGAAGAAGGTAAGGGTTTCAAATGAACCTCTTGAACCTGAG
TGATGAAATTTTTCAAGGCCACGGATCTCCTCTTAAAGGCAATAAGATCTGCCCCGTTTCTGTTTCGGGCAGTTTATGAGCCCTCGATTGGAAAT
CATAGGGTTGAGATTTATCATTTACGCTGCCCGGTGTGATGACCTTGCCCACCTGTCATGGACGGCCTAGATTTACGTTACGTACACGTGGGGAT
AGATAAAGGCAACTGTTTGTGCCTTTTGGTGGGAAAAGTAAATTTTGGTTTCAAGTTTTCGGAGATTAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399239] | SGN-U583916 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196013 [Download][View] | Facility Assigned ID: FA0AAD30BC01RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0018 | Quality Trim Threshold: 14.5 |
Working
