EST details — SGN-E399386

Search information 
Request: 399386Match: SGN-E399386
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183557Clone name: TUS-42-H19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183557 is on microarray TOM1 spot ID 1-1-6.4.1.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C34358 [cLEG-30-K15] Trace: SGN-T69181 EST: SGN-E255455 Direction: 5' Facility: TIGR
Clone: SGN-C183557 [TUS-42-H19] Trace: SGN-T196090 EST: SGN-E394764 Direction: 3' Facility: INRA
Clone: SGN-C183557 [TUS-42-H19] Trace: SGN-T196090 EST: SGN-E399385 Direction: 3' Facility: INRA
Clone: SGN-C183557 [TUS-42-H19] Trace: SGN-T196091 EST: SGN-E394765 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E399386Length: 476 bp (921 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E399386 [] (trimmed) GAAAACAAGGAGATATGAGAAGCACATCAGGTACGAGTCAAGGAAGGCTCGTGCAGAAACTAGAACACGAATCAAGGGACGTTTTGCCAAGATGG
ATTACAGGGATTCCTCCGTGCATCAGTAATGTCAAACGTTGTTTGTTTTTCTCCGAATCCAGGACATTCTGCTTGAAGATCATCGGTATACTGAA
CTGAAAAACGTTTAGTCGTGTGGACTGCAAATCTTTTATCAGCTCGATCGCAGGATCTATAGAGGCAATTAGGGTGTCTATCTTATTTTTCAGCA
TGTATTTATAGACTATAATAATCTGTAAAGCTAAAAGAAGTTGATAAAAACATGTAGCATAGAAAAGGGGTAAAAAAAAACAATGAGATTTTTAG
TATAGTGTTTTGTGTAGCTTGTTGTGTATGTAGGCTTTTGCAGTTCAGCTTATATATACATTCATTCAAATGTTTATCAAATTAGTGAACTTTTG
T
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399386] SGN-U579017 Tomato 200607 Build 2 29 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200364 [Download][View] Facility Assigned ID: FA0AAD30CD10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.948 Expected Error Rate: 0.0020 Quality Trim Threshold: 12.5