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EST details — SGN-E399409

Search information 
Request: 399409Match: SGN-E399409
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183653Clone name: TUS-42-L19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183653 is on microarray TOM1 spot ID 1-1-6.4.1.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C32375 [cLEG-1-C11] Trace: SGN-T64360 EST: SGN-E248297 Direction: 5' Facility: TIGR
Clone: SGN-C183653 [TUS-42-L19] Trace: SGN-T196100 EST: SGN-E394774 Direction: 5' Facility: INRA
Clone: SGN-C183653 [TUS-42-L19] Trace: SGN-T196204 EST: SGN-E394878 Direction: 3' Facility: INRA
Clone: SGN-C183653 [TUS-42-L19] Trace: SGN-T200379 EST: SGN-E399410 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399409Length: 475 bp (924 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E399409 [] (trimmed) ACAACACTATATATAGTATTATTTATTAACTAAAGGCCTAGTTGGGCCAATAGTAATTTCAATATATTTTATGAATAAAGAAGTGACAAATTAGC
ATTTGAATGAAAAGGGAAAATATAGGATACATTGTGAAGCTTTATGTTTGAAGGTTAATCTAATCCCATTGAATTTGTCGATGGTAAGTCCAGTC
AGATGGGTTTATTGTGGTTTTACCATCTGCTAAAACCAAATCATAAGGAGAATCTTCAGGAAATTCTGTTGCCATTGATTTCCAGTGTAAACTAG
GTGTCCACTCGGCTTCCTTCAACACCTTGAGGATCTCTTCAACAACTATTTTACTCCCCTCCTCCGCTAAGTGAATCCCATCCGTAAAACAAGCA
GTCAACCAATCTTTTCTTTTCTGAAGTGCTGTCCAAAGATCAACAACCTTCAAATTCATCTCTTTGCATAGCTCCATACAGGCCTCAGAATACTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399409] SGN-U571000 Tomato 200607 Build 2 31 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196204 [Download][View] Facility Assigned ID: FA0AAD30CF10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.949 Expected Error Rate: 0.0096 Quality Trim Threshold: 14.5