EST details — SGN-E399413

Search information 
Request: 399413Match: SGN-E399413
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183683Clone name: TUS-42-N1
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183683 is on microarray TOM1 spot ID 1-1-8.2.1.1 [Order] [Tomato Microarray Database]
See unigene SGN-U578456 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C32397 [cLEG-1-E5] Trace: SGN-T64424 EST: SGN-E248361 Direction: 5' Facility: TIGR
Clone: SGN-C183683 [TUS-42-N1] Trace: SGN-T200477 EST: SGN-E399600 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E399413Length: 476 bp (937 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E399413 [] (trimmed) AAGAAAAAAGTATTTGATCAAACTCGTGAGTGAGTACAACTTTCATGTTACATTCCCCAAAAAGGTATAAAAATCTAAAATAATCGTAACCACAA
TAACTCGATAGTATATTATAATACTAAAATGACGTAAAACCTTTTACGCCAAAGGACACACCCCATGCTAATCTCAACAAATACTTCCATGGGAC
AACATCTCCGGCAAACACGGACATACTCTAGAAATAAATAAAAAAATAGAGCGAAAACTGAAACTCACAGTAAAACCAAAAAATAATAACTTCAA
TATTGAATAAATGGAACTGCAAACCATTAGGTACGGCAAATCAGCATCTTCAAAAGAGGAGAAATTAAATGCACCACATGGTCTTCATGAGAACT
GTGAATTGTCATATATCATGAAAACATGCCTTACATCCACTCTAGTAGAAACAATCGGAACTCATGAGTAGCATCATAATATGCTTAATAAAACC
C
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399413] SGN-U578456 Tomato 200607 Build 2 466 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200381 [Download][View] Facility Assigned ID: FA0AAD30CG01FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.928 Expected Error Rate: 0.0023 Quality Trim Threshold: 14.5