EST details — SGN-E399417

Search information 
Request: 399417Match: SGN-E399417
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183687Clone name: TUS-42-N5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183687 is on microarray TOM1 spot ID 1-1-4.2.1.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C32391 [cLEG-1-E13] Trace: SGN-T64364 EST: SGN-E248301 Direction: 5' Facility: TIGR
Clone: SGN-C183687 [TUS-42-N5] Trace: SGN-T196102 EST: SGN-E394776 Direction: 3' Facility: INRA
Clone: SGN-C183687 [TUS-42-N5] Trace: SGN-T196102 EST: SGN-E399416 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399417Length: 500 bp (939 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E399417 [] (trimmed) GCTACATGGTTGGCAAAAACAAATTATGTGATGTGTTAGTGAAGTAAGGTGATATTTTAATTGATATTCTTTAGATATGTCTTCTGTCGTGGAAA
ATCTGTTTGCTGCTGTTGTGGGCAAAATAGATCAGCTCTGGCTAAAACCTTTCCTTTCTATTCTTAAAAGGATTTTAGATAGCTAAAGCTATATT
TGCTAGTTTTATGTTCTTGTTGTTGTTGGTTGGTAATTTCTTTCCAAGTTCTCACCCCTTCAGGACTCCACAGGAAAACTGACCTATATGTTGTA
GAACTCGCCTTCCCCCTCTAGTCGTAACAAGCCATATTATTATATCCTCAGATTAAACTTTTAAATAGGCAAACAACTTTCATCTTTATCTTCAG
CTGTAATTTTCTGCTATCAGCAGGTTCACTAAATTATTGTATTTTCTTGAGTACTGTTAATGTTGCAAAATGATCCAAAAACTTGCGAGTACTTC
ATTGGCTATTATTAATATATGGTTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399417] SGN-U577050 Tomato 200607 Build 2 9 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200383 [Download][View] Facility Assigned ID: FA0AAD30CG03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.938 Expected Error Rate: 0.0063 Quality Trim Threshold: 14.5