EST details — SGN-E399435
| Search information |
| Request: 399435 | Match: SGN-E399435 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183745 | Clone name: TUS-42-P15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183745 is on microarray TOM1 spot ID 1-1-2.4.1.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C32473 [cLEG-1-O11] | Trace: SGN-T64383 | EST: SGN-E248320 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183745 [TUS-42-P15] | Trace: SGN-T196109 | EST: SGN-E394783 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183745 [TUS-42-P15] | Trace: SGN-T196109 | EST: SGN-E399434 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183745 [TUS-42-P15] | Trace: SGN-T199669 | EST: SGN-E398343 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399435 | Length: 646 bp (917 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399435 [] (trimmed)
TTACTTGTGGTGGATTTGCTGTTGGATTTAGATTTAATCACACAATGATGGATGCTTATGGCTTCAAAATGTTTCTAAATGCGTTAAGTGAATTA
ATTCAAGGAGCTTCAACACCTTCTATATTGCCTGTATGGGAAAGACATCTCCTAAGTGCTAGATCATCACCAAGTATTACATGTATTCATCATGA
GTTTGATGAGGAAATTGAATCAAAAATTGCGTGGGAATCTATGGAAGATAAGTTGATACAACAATCATTTTTCTTTGGAAATGAGGAGATGGAAG
TCATTAAAAATCAAGTTCCTCCAAATTATGAATGTACAAAATTCGAGTTATTAATGGCATTTTTATGGAAATGTCGTACCATTGCTCTTAATTTG
CACTCTGATGAAATTGTTCGTTTGACATACGTTATTAATATACGTGGAAAAAAGTCACTCAACATTGAATTACCAATTGGTTATTATGGGAATGC
GTTTATTACTCCAGTTGTTGTATCAAAAGCAGGTTTGTTATGTTCAAATCCAGTGACATATGCAGTTGAATTGATCAAGAAAGTTAAAGATCATA
TAAATGAAAAATACATCAAATCATTGATAAATTTAATGGTTACTAAAGGGAAACCAAAATTAACAAAATCTTGGAA
ATTCAAGGAGCTTCAACACCTTCTATATTGCCTGTATGGGAAAGACATCTCCTAAGTGCTAGATCATCACCAAGTATTACATGTATTCATCATGA
GTTTGATGAGGAAATTGAATCAAAAATTGCGTGGGAATCTATGGAAGATAAGTTGATACAACAATCATTTTTCTTTGGAAATGAGGAGATGGAAG
TCATTAAAAATCAAGTTCCTCCAAATTATGAATGTACAAAATTCGAGTTATTAATGGCATTTTTATGGAAATGTCGTACCATTGCTCTTAATTTG
CACTCTGATGAAATTGTTCGTTTGACATACGTTATTAATATACGTGGAAAAAAGTCACTCAACATTGAATTACCAATTGGTTATTATGGGAATGC
GTTTATTACTCCAGTTGTTGTATCAAAAGCAGGTTTGTTATGTTCAAATCCAGTGACATATGCAGTTGAATTGATCAAGAAAGTTAAAGATCATA
TAAATGAAAAATACATCAAATCATTGATAAATTTAATGGTTACTAAAGGGAAACCAAAATTAACAAAATCTTGGAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399435] | SGN-U579318 | Tomato 200607 | Build 2 | 204 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199669 [Download][View] | Facility Assigned ID: FA0AAD30CH08RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.937 | Expected Error Rate: 0.0041 | Quality Trim Threshold: 14.5 |
Working
