EST details — SGN-E399461
| Search information |
| Request: 399461 | Match: SGN-E399461 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183514 | Clone name: TUS-42-F24 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183514 is on microarray TOM1 spot ID 1-1-1.2.1.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183514 [TUS-42-F24] | Trace: SGN-T194985 | EST: SGN-E393659 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183514 [TUS-42-F24] | Trace: SGN-T199576 | EST: SGN-E398250 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183514 [TUS-42-F24] | Trace: SGN-T199676 | EST: SGN-E398350 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183514 [TUS-42-F24] | Trace: SGN-T199676 | EST: SGN-E399460 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399461 | Length: 586 bp (884 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399461 [] (trimmed)
TTTTTTGTTTTTTGTCCCCCTTCTTTTTCCTTAACCATTTGGAATCACCATTGAAGAAGAGATGGAGATTGCCTAGAAATGTTCTTCTTTTTTTT
TTTAACTTCTTAATTTTTGAATCTGCCGACAATGATGATATGGACAGAAAAAATTTGGTTAATTCTATTTTTTAAAGATTGTTCTCAGAGGCAGC
ATTCATACTTTTTATGGACAGGTACCTGTAAAAGTTTTTTACATTGTCAGTGTATAGTAGTTAAATTCTTCTCTATATCGAGAAATATTTTGTCA
ACCCTTTTCATTAGTGAACTTGTTGCGACTTAGGTTCTTCAAGAATTCACACATGGAAAGCAAGAGAAAGTAAGCAAGACTGAGTTTAAAGAAGT
TCTTTCAGATATTTTACTAGGAATGGCTGCTGGTCTAAAGCGAGATCCTATTGTACTCCTTCGTATGGATGGAGAAGATCTTCTTGAGTTCGTTA
AAAGTCCTGCATTCGAACCAAAAATGATTTCCCTGTACTTCTGAATTAAAATTGCCCTGATGGATCCCTCAAAGATACATCATCAAGGCTTTTGA
AAAACTTAAGGTTTGA
TTTAACTTCTTAATTTTTGAATCTGCCGACAATGATGATATGGACAGAAAAAATTTGGTTAATTCTATTTTTTAAAGATTGTTCTCAGAGGCAGC
ATTCATACTTTTTATGGACAGGTACCTGTAAAAGTTTTTTACATTGTCAGTGTATAGTAGTTAAATTCTTCTCTATATCGAGAAATATTTTGTCA
ACCCTTTTCATTAGTGAACTTGTTGCGACTTAGGTTCTTCAAGAATTCACACATGGAAAGCAAGAGAAAGTAAGCAAGACTGAGTTTAAAGAAGT
TCTTTCAGATATTTTACTAGGAATGGCTGCTGGTCTAAAGCGAGATCCTATTGTACTCCTTCGTATGGATGGAGAAGATCTTCTTGAGTTCGTTA
AAAGTCCTGCATTCGAACCAAAAATGATTTCCCTGTACTTCTGAATTAAAATTGCCCTGATGGATCCCTCAAAGATACATCATCAAGGCTTTTGA
AAAACTTAAGGTTTGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399461] | SGN-U578921 | Tomato 200607 | Build 2 | 21 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199576 [Download][View] | Facility Assigned ID: FA0AAD30DC12RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.934 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |
Working
