EST details — SGN-E399462

Search information 
Request: 399462Match: SGN-E399462
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183540Clone name: TUS-42-H2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183540 is on microarray TOM1 spot ID 1-1-7.4.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183540 [TUS-42-H2] Trace: SGN-T196157 EST: SGN-E394831 Direction: 5' Facility: INRA
Clone: SGN-C183540 [TUS-42-H2] Trace: SGN-T200482 EST: SGN-E399608 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E399462Length: 326 bp (1011 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E399462 [] (trimmed) TCAAATAGCAGCTCTAGTAGCTCCAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGA
TAAGATTAAGAAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGA
AAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCT
GCGGTGGAGCATGAGGCGGAGGGGAAGGAGAGGAAGGGATT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399462] SGN-U581375 Tomato 200607 Build 2 231 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196157 [Download][View] Facility Assigned ID: FA0AAD30DD01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.916 Expected Error Rate: 0.0002 Quality Trim Threshold: 14.5