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EST details — SGN-E399487

Search information 
Request: 399487Match: SGN-E399487
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183702Clone name: TUS-42-N20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183702 is on microarray TOM1 spot ID 1-1-5.2.1.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183702 [TUS-42-N20] Trace: SGN-T194999 EST: SGN-E393673 Direction: 3' Facility: INRA
Clone: SGN-C183702 [TUS-42-N20] Trace: SGN-T195000 EST: SGN-E393674 Direction: 3' Facility: INRA
Clone: SGN-C183702 [TUS-42-N20] Trace: SGN-T195543 EST: SGN-E394217 Direction: 5' Facility: INRA
Clone: SGN-C183702 [TUS-42-N20] Trace: SGN-T200422 EST: SGN-E399488 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399487Length: 619 bp (932 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E399487 [] (trimmed) CCTCAAACTGATATGATATAGGAATTTTCTCATTCAATAAATATTGACATTATTGGGTCCAAGAAAAAAAGAACCACAAAAGTGCAAAATCAGAT
AAAAGGAGAAAATGAGAGAAAAGACGAGGAGAAAACATCACAATCACTCTCCTTCAACTACAAACAACCTAAAAAAGAGACGCTTCGACCAAGGG
ATGGTGTAGCCAGACAGAAGAGGGCAATGCATCAGGCACCTCTCAAGTATGTAGAGAATATTAACCACATTAAATGGAAACATGAGATAATACTG
GCAATCTGTTGTTTGCTACCGTGCATTCATAGCCCCCACCACCAAACTTCTCCATCCCATCAAAAAAACAAATTGACTGGCAACATAATAGCAAA
ACCGGGAAACAGACAGGACACTCGCACTTTTAAGTAATTATAGCAGCACCTTAGAAGCACTTTCTGTGGACAAGGGAAGGACCAGACTCATCATA
CTCGCCCTTTGAGATCCACATCTGCTGGAATGTGCTGAGGGATGCAAGAATGGATCCTCCAATCCAAACACTGAACTTCCTCTCAGGTGGTGCAA
CAACCTTAATTTTTCATGCTGCTTGGAGCCAAAGCAGTGATTTCCTTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399487] SGN-U579208 Tomato 200607 Build 2 88 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194999 [Download][View] Facility Assigned ID: FA0AAD30DG10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.962 Expected Error Rate: 0.0068 Quality Trim Threshold: 14.5