EST details — SGN-E399504
| Search information |
| Request: 399504 | Match: SGN-E399504 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182570 | Clone name: TUS-39-O16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182570 is on microarray TOM1 spot ID 1-1-1.3.8.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C182570 [TUS-39-O16] | Trace: SGN-T195275 | EST: SGN-E393949 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182570 [TUS-39-O16] | Trace: SGN-T195276 | EST: SGN-E393950 | Direction: 5' | Facility: INRA |
| Clone: SGN-C182570 [TUS-39-O16] | Trace: SGN-T195276 | EST: SGN-E398831 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399504 | Length: 768 bp (872 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399504 [] (trimmed)
CCTTGTAAAAGTGAACATTAAACACAGTGATATTCTTACAATGAATTTTTAGACTTGTACAATTTAATCTGTAAGAAAACTGCCTATAGCAGACA
GTAGTAATAAACTTTACAACATATCTTGCAAGTTGAGCTCTCTATAGCTTTTACCTGAGCTTGTCGCAATTTCCAACTTGACCACGGAGATGATA
AACAAGCTCGGAGTAGTAAGTTTGAGAGTTCGGAAGCAAATGTCATAAAGAGCTTCATTATCCAAAACCATACACTCATCTGCATTCTCAACAAG
CTGGTGAACAGAAAGAGTAGCATTATAGGGCTCAACAACTGTGTCTGAAACTTTGGGGGAAGGGAATACAGAGAAAGTAAGCATCATTCTATCTG
GGTACTCCTCCCTGATCTTAGATATAAGGAGTGTTCCCATTCCTGATCCAGTTCCACCTCCTAGAGAGTGAGCAACCTGGAAACCTTGTAAACAG
TCACAATTCTCAGCCTCCTTCCTCACAACATCAAGCACCGAGTCAATAAGCTCCGCTCCCTCAGTATAGTGTCCCTTGGCCCAGTTGTTACCAGC
ACCTGACTGGCCAAACACGAAGTTATCAGGCCTGAAAATCTGACCAAAAGGTCCAGATCTGACACTATCCATAGTTCCCGGCTCCAAATCCATGA
GGACAGCGCGTGGAACAAATCTTCCACAGCTTGCTTCATTTGAATACACGTTCAGTCCTTTCCATTTGAAATTCACTGTCCTCCTGATACCTTCC
CGGGGGAA
GTAGTAATAAACTTTACAACATATCTTGCAAGTTGAGCTCTCTATAGCTTTTACCTGAGCTTGTCGCAATTTCCAACTTGACCACGGAGATGATA
AACAAGCTCGGAGTAGTAAGTTTGAGAGTTCGGAAGCAAATGTCATAAAGAGCTTCATTATCCAAAACCATACACTCATCTGCATTCTCAACAAG
CTGGTGAACAGAAAGAGTAGCATTATAGGGCTCAACAACTGTGTCTGAAACTTTGGGGGAAGGGAATACAGAGAAAGTAAGCATCATTCTATCTG
GGTACTCCTCCCTGATCTTAGATATAAGGAGTGTTCCCATTCCTGATCCAGTTCCACCTCCTAGAGAGTGAGCAACCTGGAAACCTTGTAAACAG
TCACAATTCTCAGCCTCCTTCCTCACAACATCAAGCACCGAGTCAATAAGCTCCGCTCCCTCAGTATAGTGTCCCTTGGCCCAGTTGTTACCAGC
ACCTGACTGGCCAAACACGAAGTTATCAGGCCTGAAAATCTGACCAAAAGGTCCAGATCTGACACTATCCATAGTTCCCGGCTCCAAATCCATGA
GGACAGCGCGTGGAACAAATCTTCCACAGCTTGCTTCATTTGAATACACGTTCAGTCCTTTCCATTTGAAATTCACTGTCCTCCTGATACCTTCC
CGGGGGAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399504] | SGN-U564024 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200433 [Download][View] | Facility Assigned ID: FA0AAD27BH08FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0030 | Quality Trim Threshold: 14.5 |
Working
