EST details — SGN-E399529
| Search information |
| Request: 399529 | Match: SGN-E399529 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172923 | Clone name: TUS-14-M17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172923 is on microarray TOM1 spot ID 1-1-8.1.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14293 [cLEC-7-H16] | Trace: SGN-T25345 | EST: SGN-E202063 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172923 [TUS-14-M17] | Trace: SGN-T195147 | EST: SGN-E393821 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172923 [TUS-14-M17] | Trace: SGN-T195148 | EST: SGN-E393822 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172923 [TUS-14-M17] | Trace: SGN-T195761 | EST: SGN-E394435 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172923 [TUS-14-M17] | Trace: SGN-T200194 | EST: SGN-E398982 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399529 | Length: 590 bp (809 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399529 [] (trimmed)
AATATAAAAAGATATTTATTATATATATCCTTTCTGTGTTGGTTAACTTCTATTTCATTTTTTTAAAGACTCTTTTCACATTAGTTCAATTAAAA
TAGGATTTAGGTACGCTGGAATATCTTACATTATAGATAAAACACTCGTTAACAAATGTGATATCACATACAAAGAAATTTAAACTCGAGATCTC
TAATGTCCATGCCAGATTAAGGGTGTTTTCGGTACTAATGCATTCCTCTGTTTCCATTTGCAGATGGAAGTTGGCCTGCTTCAATCTTAAGCCGC
TGCAGTTCTTCCCTCAACGTATCATTTAGAGCATCTCTAAGGTGTGCTTGTTGTTCCAAAGCTTGCAACCGAAATTTCAGTTCTTTGTTTTCAGC
ATTTAGTCCAGAAGTGTCTCTCTGTAGAACTGTGATCTGAGCGGATAGAGTGGTGGCTTCAGTCTGCAGAGTCTGCACTTTCCTCTCTAGCTCAG
GGGGGGAACGAGTTTTTCGCTCCTTGGAACGTGCAGCAAATTGTCTGTTTGCTAAGATCCTTTTAGCTCTTTTGGGATCCATCAAGGACAGCTCA
GCAAGCCTATCAGGAGCCAT
TAGGATTTAGGTACGCTGGAATATCTTACATTATAGATAAAACACTCGTTAACAAATGTGATATCACATACAAAGAAATTTAAACTCGAGATCTC
TAATGTCCATGCCAGATTAAGGGTGTTTTCGGTACTAATGCATTCCTCTGTTTCCATTTGCAGATGGAAGTTGGCCTGCTTCAATCTTAAGCCGC
TGCAGTTCTTCCCTCAACGTATCATTTAGAGCATCTCTAAGGTGTGCTTGTTGTTCCAAAGCTTGCAACCGAAATTTCAGTTCTTTGTTTTCAGC
ATTTAGTCCAGAAGTGTCTCTCTGTAGAACTGTGATCTGAGCGGATAGAGTGGTGGCTTCAGTCTGCAGAGTCTGCACTTTCCTCTCTAGCTCAG
GGGGGGAACGAGTTTTTCGCTCCTTGGAACGTGCAGCAAATTGTCTGTTTGCTAAGATCCTTTTAGCTCTTTTGGGATCCATCAAGGACAGCTCA
GCAAGCCTATCAGGAGCCAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399529] | SGN-U579936 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195761 [Download][View] | Facility Assigned ID: FA0AAD2AG09FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.960 | Expected Error Rate: 0.0066 | Quality Trim Threshold: 14.5 |
Working
