EST details — SGN-E399554
| Search information |
| Request: 399554 | Match: SGN-E399554 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183431 | Clone name: TUS-42-C13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183431 is on microarray TOM1 spot ID 1-1-4.3.1.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C68551 [cLEN-6-N8] | Trace: SGN-T88389 | EST: SGN-E273693 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183431 [TUS-42-C13] | Trace: SGN-T194915 | EST: SGN-E393589 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183431 [TUS-42-C13] | Trace: SGN-T194915 | EST: SGN-E399133 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183431 [TUS-42-C13] | Trace: SGN-T194916 | EST: SGN-E393590 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183431 [TUS-42-C13] | Trace: SGN-T194917 | EST: SGN-E393591 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183431 [TUS-42-C13] | Trace: SGN-T199568 | EST: SGN-E398242 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399554 | Length: 672 bp (936 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399554 [] (trimmed)
AAAACATGTAAATGGTTTTACTGTGGCCTATTGTTTTTTCACCTTTCCCAATTATAAATATCCACTGCCTCAACTGAGTAAACAACCAAAATTTG
TGTTCTATAAAAAGTTTTCATATTTAGTGATCACTAAAAAAAAATCAAGAAGATGTCGACTACTGTAGGCCAAGTCATTCGTTGCAAAGCTGCTG
TGGCATGGGAAGCTGGTAAGCCATTAGTGATGGAGGAAGTAGATGTTGCTCCTCCACAGAAAATGGAAGTCCGTCTTAAGATCCTCTATACTTCA
CTCTGTCATACTGATGTATACTTCTGGGAAGCTAAGGGTCAAAATCCAGTCTTTCCTCGAATTCTTGGACATGAAGCAGCAGGGATTGTGGAGAG
TGTTGGAGAGGGAGTAACAGACCTTGCACCAGGAGACCATGTTCTTCCTGTCTTTACAGGGGAATGTAAAGATTGTGCTCACTGTAAATCTGAAG
AAAGCAATATGTGTAGCCTCTTAAGGATTAACACTGACAGGGGAGTGATGCTTAATGATGGAAAATCAAGATTTTCCATCAATGGAAACCCCATT
TACCATTTTGTTGGGACCTCTACTTTTAGTGAGTACACCGTGGTTCATGTTGGATGTGTTGCAAAAATTAACCCTCTTGCTCCTCTTGACAAAGT
ATGTGTC
TGTTCTATAAAAAGTTTTCATATTTAGTGATCACTAAAAAAAAATCAAGAAGATGTCGACTACTGTAGGCCAAGTCATTCGTTGCAAAGCTGCTG
TGGCATGGGAAGCTGGTAAGCCATTAGTGATGGAGGAAGTAGATGTTGCTCCTCCACAGAAAATGGAAGTCCGTCTTAAGATCCTCTATACTTCA
CTCTGTCATACTGATGTATACTTCTGGGAAGCTAAGGGTCAAAATCCAGTCTTTCCTCGAATTCTTGGACATGAAGCAGCAGGGATTGTGGAGAG
TGTTGGAGAGGGAGTAACAGACCTTGCACCAGGAGACCATGTTCTTCCTGTCTTTACAGGGGAATGTAAAGATTGTGCTCACTGTAAATCTGAAG
AAAGCAATATGTGTAGCCTCTTAAGGATTAACACTGACAGGGGAGTGATGCTTAATGATGGAAAATCAAGATTTTCCATCAATGGAAACCCCATT
TACCATTTTGTTGGGACCTCTACTTTTAGTGAGTACACCGTGGTTCATGTTGGATGTGTTGCAAAAATTAACCCTCTTGCTCCTCTTGACAAAGT
ATGTGTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399554] | SGN-U579420 | Tomato 200607 | Build 2 | 345 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199568 [Download][View] | Facility Assigned ID: FA0AAD30AB07RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.970 | Expected Error Rate: 0.0025 | Quality Trim Threshold: 14.5 |
Working
