Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E399557

Search information 
Request: 399557Match: SGN-E399557
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183523Clone name: TUS-42-G9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183523 is on microarray TOM1 spot ID 1-1-8.3.1.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C87600 [cLET-5-E13] Trace: SGN-T103614 EST: SGN-E290166 Direction: 5' Facility: TIGR
Clone: SGN-C183523 [TUS-42-G9] Trace: SGN-T195485 EST: SGN-E394159 Direction: 3' Facility: INRA
Clone: SGN-C183523 [TUS-42-G9] Trace: SGN-T195950 EST: SGN-E399151 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399557Length: 508 bp (949 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E399557 [] (trimmed) GTGGAATTGACGCTGTTGTTTTGTACAGCCCGAAGATTTTTGAAAAAGCCGGGATCAAGTCCGATCACGACAAGTTGCTCTGCACCGTCGCCGTC
GGAGTAGTCAAAACATTGTTCATTCTAGTAGCCACATTTATGCTTGACAGATCCGGTCGTCGGCGGTTGCTATTAACCAGTGTCGGCGGAATGGT
GGCGTCGTTGGTGCTTCTCGCGACAGGCCTCACAATTATCGAACACTCAGAACAGAAATTAATTTGGGCAATAGCACTCTGCATAGCAATGGTGT
TAGCTTACGTGGCGCTTTTCTCAATCGGTATGGGTCCGATAACGTGGGTTTACAGTTCGGAGATATTTCCGTTGAGGCTCCGGGCAACTGGATGC
AGTATAGGGGTAGCAGTGAACAGAGTAACAAGTGGAGTAGTGTCAATGACGTTTTTGTCCCTAGAAAAGGCGATAACAATCGGAGCTGCGTTCTT
CTTGTACGCCGCCTTAACGGCGGTGGCGTTGGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399557] SGN-U565600 Tomato 200607 Build 2 65 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200449 [Download][View] Facility Assigned ID: FA0AAD30AD05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.985 Expected Error Rate: 0.0067 Quality Trim Threshold: 14.5