EST details — SGN-E399580

Search information 
Request: 399580Match: SGN-E399580
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183622Clone name: TUS-42-K12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183622 is on microarray TOM1 spot ID 1-1-5.3.1.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C25544 [cLEF-13-D4] Trace: SGN-T59616 EST: SGN-E245114 Direction: 5' Facility: TIGR
Clone: SGN-C183622 [TUS-42-K12] Trace: SGN-T195047 EST: SGN-E393721 Direction: 3' Facility: INRA
Clone: SGN-C183622 [TUS-42-K12] Trace: SGN-T195048 EST: SGN-E393722 Direction: 5' Facility: INRA
Clone: SGN-C183622 [TUS-42-K12] Trace: SGN-T196041 EST: SGN-E394715 Direction: 5' Facility: INRA
Clone: SGN-C183622 [TUS-42-K12] Trace: SGN-T196041 EST: SGN-E399292 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399580Length: 300 bp (1043 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E399580 [] (trimmed) ACTNTTCTTTACTTCATTCTGGACATTTACAGAATATCCAAACACATTTGATTTTATTTTTCGCCATCGTCAAGCTTGTGCTGTCAACTAATATT
ACTTCTGAGACTTGAGTTCTTCTACTCTCTTTTCAGTTTCCCTCAATGCTTTCCCATAGATTCTAATCAACTCGTCAAGTTCTTCTGGAGTAACT
ACAAATGGAGGAGACATCATGATGGTATCACCATCAACTCGTACCAACATGCCATTCTTCTGACATTGCGCTCCAAAATATGCACCAACACCCCA
TTCGGGAGGGAAAGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399580] SGN-U570910 Tomato 200607 Build 2 76 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200460 [Download][View] Facility Assigned ID: FA0AAD30BF06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.956 Expected Error Rate: 0.0097 Quality Trim Threshold: 14.5