EST details — SGN-E399611
| Search information |
| Request: 399611 | Match: SGN-E399611 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183642 | Clone name: TUS-42-L8 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183642 is on microarray TOM1 spot ID 1-1-1.4.2.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183642 [TUS-42-L8] | Trace: SGN-T194990 | EST: SGN-E393664 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183642 [TUS-42-L8] | Trace: SGN-T195538 | EST: SGN-E394212 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183642 [TUS-42-L8] | Trace: SGN-T196164 | EST: SGN-E394838 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399611 | Length: 576 bp (935 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399611 [] (trimmed)
GCTACATGGTTGGCAAAAGCAAATTATGTGATGTGTTAATGAAGTAAGGTGATATTTTACTTGATATTCTTTATATATGTCTTCTGTCTTGGAAA
ATCTGTTTGCTGCTGTTGTGGGCAAAATATATCATCTCTGGCTAAAACCTTTCCTTTCTATTCTTAAAAGGATTTTAGATAGCTAAAGCTATATT
TGCTAGTTTTATGTTCTTGTTGTTATTGGTTGGGAATTTCTTTCCAAGTTCTCACCCCTTCAGGACTCCATATGAAAACTGACCTATATGTTGTA
TCAACTCGCCTTCCCCCTCTAGTCGTAACAAGCCAGAGTAAATATCATCAGATTATACTTTTAAATAGGCAAACTACTTTCATCTTTATCTTCAG
CTGTAATTTTCTGCTAACTGCAAGTTCACTAAATTATTGTATTTTCTTGACTACTGTTAATGTTGCGGAATGATCCACAAACTTGCCAGTACTTC
ACTGGCTATTATTAATATATGGTTCAAGTTGCAGTGAAATTACAAAGGCTGTTATAATGGTAATTGCACTCTGCGGGAAAATGGCGCTAACTGAT
TTTCTT
ATCTGTTTGCTGCTGTTGTGGGCAAAATATATCATCTCTGGCTAAAACCTTTCCTTTCTATTCTTAAAAGGATTTTAGATAGCTAAAGCTATATT
TGCTAGTTTTATGTTCTTGTTGTTATTGGTTGGGAATTTCTTTCCAAGTTCTCACCCCTTCAGGACTCCATATGAAAACTGACCTATATGTTGTA
TCAACTCGCCTTCCCCCTCTAGTCGTAACAAGCCAGAGTAAATATCATCAGATTATACTTTTAAATAGGCAAACTACTTTCATCTTTATCTTCAG
CTGTAATTTTCTGCTAACTGCAAGTTCACTAAATTATTGTATTTTCTTGACTACTGTTAATGTTGCGGAATGATCCACAAACTTGCCAGTACTTC
ACTGGCTATTATTAATATATGGTTCAAGTTGCAGTGAAATTACAAAGGCTGTTATAATGGTAATTGCACTCTGCGGGAAAATGGCGCTAACTGAT
TTTCTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399611] | SGN-U577050 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195538 [Download][View] | Facility Assigned ID: FA0AAD30DF04RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.939 | Expected Error Rate: 0.0286 | Quality Trim Threshold: 14.5 |
Working
