EST details — SGN-E538213
| Search information |
| Request: 538213 | Match: SGN-E538213 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189225 | Clone name: TUS-57-D23 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C47394 [cLEI-16-B21] | Trace: SGN-T83248 | EST: SGN-E269024 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189225 [TUS-57-D23] | Trace: SGN-T339086 | EST: SGN-E538211 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E538213 | Length: 843 bp (893 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E538213 [] (trimmed)
CTCCGGCCGAACAAAAATGGAGTACGTTAATCCTGAAGGTCTCCGTTTAGATGGTCGCCGTCCAATGGAGGTTTCTTGCTCTCTCATCACTAAAT
TTCTACCTTTTTAATCGTTATCTTCATTCTCTTATTACTTTGATTCGTCTGTGCCCGTGTTTACTTTCAGATGAGACAACTTCGTGCTGAAATAG
GGGTTGTATCGAGAGCAGATGGTTCTGCCTCGTTTGAAATGGGGAATACCAAAGTCATTGCAGCAGTTTATGGTCCTCGGGAGGTTAAGAACAGG
AGCCAACAGATGAATGACCAGGCACTGGTACGTTGCGAGTATAGCATGGCTAATTTCAGCACTGGCGATCGCCGGAGAAAAACAAAGGGTGACAG
GAGATCCACGGAGATATCTCTTGTTATTCGCCAGACAATGGAAGCTTGCATATTGACACACCTGATGCCTCGCTCTCAGATAGACATTTATGTCC
AAGTCCTCCAAGCAGATGGAGGTACAAGATCAGCATGCATAAATGCTGCCACACTGGCACTTGCTGACGCCGGGATTCCCATGCGTGATCTTGTT
ACATCATGCAGTGCTGGATATCTGAATAGCACACCTCTTCTTGATTTAAACTACTTGGAAGACAGTGCTGGAGGTGCTGATGTCACTGTAGGAAT
TTTACCTAAGTTGGACAAAGTGACCCTTCTGCAGATGGATGCTAAACTACCAATGGATATTTTTGAAAATGTCATGCAATTAGCAGTTGAAGGCT
GCAAAGCAGTAGAAAGCCACATCCCGAGAATATTGTTAGAAAATGCTCAGACATTGGTCATTCGCCAAGGGTATGGCTCTTAA
TTCTACCTTTTTAATCGTTATCTTCATTCTCTTATTACTTTGATTCGTCTGTGCCCGTGTTTACTTTCAGATGAGACAACTTCGTGCTGAAATAG
GGGTTGTATCGAGAGCAGATGGTTCTGCCTCGTTTGAAATGGGGAATACCAAAGTCATTGCAGCAGTTTATGGTCCTCGGGAGGTTAAGAACAGG
AGCCAACAGATGAATGACCAGGCACTGGTACGTTGCGAGTATAGCATGGCTAATTTCAGCACTGGCGATCGCCGGAGAAAAACAAAGGGTGACAG
GAGATCCACGGAGATATCTCTTGTTATTCGCCAGACAATGGAAGCTTGCATATTGACACACCTGATGCCTCGCTCTCAGATAGACATTTATGTCC
AAGTCCTCCAAGCAGATGGAGGTACAAGATCAGCATGCATAAATGCTGCCACACTGGCACTTGCTGACGCCGGGATTCCCATGCGTGATCTTGTT
ACATCATGCAGTGCTGGATATCTGAATAGCACACCTCTTCTTGATTTAAACTACTTGGAAGACAGTGCTGGAGGTGCTGATGTCACTGTAGGAAT
TTTACCTAAGTTGGACAAAGTGACCCTTCTGCAGATGGATGCTAAACTACCAATGGATATTTTTGAAAATGTCATGCAATTAGCAGTTGAAGGCT
GCAAAGCAGTAGAAAGCCACATCCCGAGAATATTGTTAGAAAATGCTCAGACATTGGTCATTCGCCAAGGGTATGGCTCTTAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E538213] | SGN-U566640 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T339088 [Download][View] | Facility Assigned ID: TUS57D23_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.987 | Expected Error Rate: 0.0055 | Quality Trim Threshold: 14.5 |
Working
