EST details — SGN-E538364
| Search information |
| Request: 538364 | Match: SGN-E538364 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189326 | Clone name: TUS-57-I4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C64090 [cLEM-5-B22] | Trace: SGN-T85265 | EST: SGN-E271460 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189326 [TUS-57-I4] | Trace: SGN-T348919 | EST: SGN-E548044 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E538364 | Length: 854 bp (898 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E538364 [] (trimmed)
CCAGAAAAGAATGGATCTTGGTTCACTAATTCTTCCAAGTAAAATTACAAAGAGAATCAAGAAGAAAAAAAATAAGAAGCATGAAAAGGAAAATG
TATAATTCTATTTGTGTATTTCTCTTTGTAGTCAAATGATCGATCGTAGAGAAACAAGATTTTGCATAATAACGACGATATAATTTCAGACCTCA
ATTATGAAATTACACTGAGTATGTTAGTAATCATTGGTTCGAAGCACCTTCATTGGTCTCAAGAACCCTATGGATGAAGATGTTCTCTTGTTCTC
TTCCAACAACAAACTCGACGAACATGCCTCTTCATCCGGTAATCGTATTTAATCGTAACGTTAGAAAAATCACAATAATGAGACGGATTCAACAT
ATAAACTGCAAACGCACATGCATGTATTAATGTCCTCGGACTAGAGGTGACAATTGAACGAACTGAAGTCAAACTTGATGTCTAACATGAAACTA
AACATCGATATTTGATACGAGTTCGTTCACCTAAAATTTGTTTGGATCAAAATGAGTTCAATCCGAAGATAGATCAAATACCAAATCACATCACC
TTCCTTTTCTATTTGAAGAAAAAGAATGTCAAATGCATTCGACTCAAAAGTCTATCGAAAACAACCTCTCTAATAATATGTACATTTTACTATTC
TCAAACATCACTCGTGAGACTAAACTTTCTATATTGTTATCGTCGATGTATAGACGGAACTACAAAATCTTACTTACGCATTCGACAAAACTCAA
TAACTCGTAAACTTCGTATTTATATTTTAAAATCAACTATCCCGTAAAAAACTATATTTATAAACTTAAATTCTAGCTTTGTTCCGCTCTTTTA
TATAATTCTATTTGTGTATTTCTCTTTGTAGTCAAATGATCGATCGTAGAGAAACAAGATTTTGCATAATAACGACGATATAATTTCAGACCTCA
ATTATGAAATTACACTGAGTATGTTAGTAATCATTGGTTCGAAGCACCTTCATTGGTCTCAAGAACCCTATGGATGAAGATGTTCTCTTGTTCTC
TTCCAACAACAAACTCGACGAACATGCCTCTTCATCCGGTAATCGTATTTAATCGTAACGTTAGAAAAATCACAATAATGAGACGGATTCAACAT
ATAAACTGCAAACGCACATGCATGTATTAATGTCCTCGGACTAGAGGTGACAATTGAACGAACTGAAGTCAAACTTGATGTCTAACATGAAACTA
AACATCGATATTTGATACGAGTTCGTTCACCTAAAATTTGTTTGGATCAAAATGAGTTCAATCCGAAGATAGATCAAATACCAAATCACATCACC
TTCCTTTTCTATTTGAAGAAAAAGAATGTCAAATGCATTCGACTCAAAAGTCTATCGAAAACAACCTCTCTAATAATATGTACATTTTACTATTC
TCAAACATCACTCGTGAGACTAAACTTTCTATATTGTTATCGTCGATGTATAGACGGAACTACAAAATCTTACTTACGCATTCGACAAAACTCAA
TAACTCGTAAACTTCGTATTTATATTTTAAAATCAACTATCCCGTAAAAAACTATATTTATAAACTTAAATTCTAGCTTTGTTCCGCTCTTTTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E538364] | SGN-U572381 | Tomato 200607 | Build 2 | 42 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T339239 [Download][View] | Facility Assigned ID: TUS57I04_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.944 | Expected Error Rate: 0.0012 | Quality Trim Threshold: 20.5 |
Working
