EST details — SGN-E538877
| Search information |
| Request: 538877 | Match: SGN-E538877 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189649 | Clone name: TUS-58-F15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C72886 [cLER-2-I17] | Trace: SGN-T92438 | EST: SGN-E278720 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189649 [TUS-58-F15] | Trace: SGN-T339755 | EST: SGN-E538880 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E538877 | Length: 788 bp (893 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E538877 [] (trimmed)
AATCACACCAATCTATATATAACGTAGGTATTTTACACTCTCTTTATGTTCAGTAGATCAAATTAGGACTCCTGTACAAATCTACATATGCAATT
ACAATCAGAATCTCTCCGGCGATCAACACCCAAGAGAACAAACAAACTAAGAAAAATTCGAACTCACTAACAGTTAAAAATCAGAACACCATGAG
TAATGGAGCTCAAAGCCAGCCATCAACGAGTGTTTCCAACTCAAATGTTGGACCTGACATTTTTACAAGATTGAAGATATCAAGCTACGCGTGAA
GCTATAAGTTCTAGATGGTCTAGGTGAAAAATCAAGACCAAACATCTCTTTAGGAGCTCGTCCTGGCTTCATCAATCCGGTTAATTTTGCTATCA
GGTAAGCACTATCTGCAATGTGGTTCATATCATCTGTCTTGTTCCACAAACGCTGAACCAACTGGAACCTCCTATGTTTGCTGTTAATCCGAATG
CCCCACTTAAGGTACAGGCTTTCTCGTTCTTCTTCTGTTAGCTTCCTCAACATTTGCTTGCGCAGCATTCGTCTCTCTTGACGAAGGTCTTTCAT
ACTTTGTGCAAGGGACAGAATCCTGCCATTGACCTCTGTTTTCTCTCCATGCGAATATGTGTCATTGAGGAAGGTCAGTCTTCTGATCTCTACCT
CCAGATATACAGCATCCTTAGCATCACCTTGGAAAAGGAGGAAGAAATATGTTCTGTGTACGAGGGAAATGTTGCAAACATTCCAAAGTTCAATG
ATCTCTTTCTGAAGCATCTTGAACTCCG
ACAATCAGAATCTCTCCGGCGATCAACACCCAAGAGAACAAACAAACTAAGAAAAATTCGAACTCACTAACAGTTAAAAATCAGAACACCATGAG
TAATGGAGCTCAAAGCCAGCCATCAACGAGTGTTTCCAACTCAAATGTTGGACCTGACATTTTTACAAGATTGAAGATATCAAGCTACGCGTGAA
GCTATAAGTTCTAGATGGTCTAGGTGAAAAATCAAGACCAAACATCTCTTTAGGAGCTCGTCCTGGCTTCATCAATCCGGTTAATTTTGCTATCA
GGTAAGCACTATCTGCAATGTGGTTCATATCATCTGTCTTGTTCCACAAACGCTGAACCAACTGGAACCTCCTATGTTTGCTGTTAATCCGAATG
CCCCACTTAAGGTACAGGCTTTCTCGTTCTTCTTCTGTTAGCTTCCTCAACATTTGCTTGCGCAGCATTCGTCTCTCTTGACGAAGGTCTTTCAT
ACTTTGTGCAAGGGACAGAATCCTGCCATTGACCTCTGTTTTCTCTCCATGCGAATATGTGTCATTGAGGAAGGTCAGTCTTCTGATCTCTACCT
CCAGATATACAGCATCCTTAGCATCACCTTGGAAAAGGAGGAAGAAATATGTTCTGTGTACGAGGGAAATGTTGCAAACATTCCAAAGTTCAATG
ATCTCTTTCTGAAGCATCTTGAACTCCG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E538877] | SGN-U574949 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T339752 [Download][View] | Facility Assigned ID: TUS58F15_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0030 | Quality Trim Threshold: 14.5 |
Working
