EST details — SGN-E539398
| Search information |
| Request: 539398 | Match: SGN-E539398 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189952 | Clone name: TUS-59-C6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C70938 [cLER-16-G1] | Trace: SGN-T95624 | EST: SGN-E284351 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189952 [TUS-59-C6] | Trace: SGN-T340275 | EST: SGN-E539400 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539398 | Length: 694 bp (866 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E539398 [] (trimmed)
AAAATTAATTAAAAAACAAGTTGTTCCAAAAAAATCTTTTTCCAGGTCCCCAAAAAAAATTGCCTTTAAAAGGGGGGCCCAATTTTCCTTTGGAA
ATAAAAATAAATCTTTTTTAAAGGCTTAAAAAGCCAAAAACCCAAAAAAAATTCCCCATATCAAAAACAAAAATTTTGAATTATTTAAAAAACCC
CCAAAGCCTTATTCTTTTTTTTAACAAAAAAAAACTTTTTCCAGGGTTCAGAAACCGGGAACCCCCATTCCCTATCCGTTTTAAGAGGGGCCCCC
CTGTCAAAACCGTTCGCCGGGGCCCCCTCCTCGGCCACGGGGAGTTTATTTTTAACCCGTGCTGAAAACATGTCAAGCCCGGGGAGGACTTTAAC
GATGTCCAAAACCAGTCCCCCCCCGAGGGTTCGGGAAAAATTTTCCCTAAAAACAACCCTAAAAACTGGGATGGGTTGAGCATCGGGGGGCAAAG
GGTATGCGGGAAAAACCCCCCCAAATCCCCTTAAAGTTTCAAAAATTTCAAACCCCCCAGGTTTGCTATTGTCTTTAAAAAAAAAGGCCCCCAGG
GGAACCCCCCCTTCTTGGGAGACTATCCCAAATCTCCCCGCCTTTTCGAGCCCTTCCCTAAGAACCCTTGGATTTTCTTGAAATTCCCCAAAACA
TTCTGGGAACCCCCTTAACCCAAACAAAA
ATAAAAATAAATCTTTTTTAAAGGCTTAAAAAGCCAAAAACCCAAAAAAAATTCCCCATATCAAAAACAAAAATTTTGAATTATTTAAAAAACCC
CCAAAGCCTTATTCTTTTTTTTAACAAAAAAAAACTTTTTCCAGGGTTCAGAAACCGGGAACCCCCATTCCCTATCCGTTTTAAGAGGGGCCCCC
CTGTCAAAACCGTTCGCCGGGGCCCCCTCCTCGGCCACGGGGAGTTTATTTTTAACCCGTGCTGAAAACATGTCAAGCCCGGGGAGGACTTTAAC
GATGTCCAAAACCAGTCCCCCCCCGAGGGTTCGGGAAAAATTTTCCCTAAAAACAACCCTAAAAACTGGGATGGGTTGAGCATCGGGGGGCAAAG
GGTATGCGGGAAAAACCCCCCCAAATCCCCTTAAAGTTTCAAAAATTTCAAACCCCCCAGGTTTGCTATTGTCTTTAAAAAAAAAGGCCCCCAGG
GGAACCCCCCCTTCTTGGGAGACTATCCCAAATCTCCCCGCCTTTTCGAGCCCTTCCCTAAGAACCCTTGGATTTTCTTGAAATTCCCCAAAACA
TTCTGGGAACCCCCTTAACCCAAACAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539398] | SGN-U604073 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340273 [Download][View] | Facility Assigned ID: TUS59C06_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.880 | Expected Error Rate: 0.0264 | Quality Trim Threshold: 14.5 |
Working
