EST details — SGN-E539877
| Search information |
| Request: 539877 | Match: SGN-E539877 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190231 | Clone name: TUS-59-N21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C78682 [cLES-6-H1] | Trace: SGN-T98616 | EST: SGN-E287164 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190231 [TUS-59-N21] | Trace: SGN-T340754 | EST: SGN-E539879 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539877 | Length: 739 bp (889 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E539877 [] (trimmed)
AGACGTAATATGGAGACTGCAATTGCAACATTAGATACATTGGTTTAGGCAAGACAAATGGGGGGTGTTTCCAGCTAAATCAAGCATTACCTCAG
TAAAGAACACCTCTATAGACTATAAGAAACAGGAAGTGAAATGTGATTTGTTCATTATTTCATACAACAGTTTAGACTATATCTTGACACAAGAT
GCTATGTATTTCAGATCTCCATAAAGCAGTTCCGTTTGGTTCTCACTTCTCAGCTTGTCACTTGAACTAAAATTGTCCCAATTAGTCCTTCTTGT
CGACATCAGCCTCAGATTTGACTACAGATTCAACAGCAGCAGTCTCTGAAGGGGCATCAGCACCAGCCTCGGAACCTTTTGACGGACCATCATAT
TCCGATGGCTTGGCGCTCCCTGAAGCATCATCCTCGCCTGGCTTAGCTTCACCATCAGTAGTTGCTTCAATAGTTTCGTCATTAGCTTGCCCATC
ATTTACTGGCACTGCCTGCTTCACAGTACCAACTTTGACATATTTGCTCATGAATTTGTACTCCCAATCTTGCAAGGCATCAAGCTCAAATGCAC
CAAGGCCAGAAATATCCCCTGTGAGATCTTTTTCCTCAAAGGACAGCTTGGCAAGAGCTCTACTAGCATCCTTTCCAGCAAACAATGCATAAGGT
CCCCCAGGTCCATAAAACATTCTGCTCTGAGAAACATCATAGATCTGACCCTTAATAGCCATCAACAGAGGCTT
TAAAGAACACCTCTATAGACTATAAGAAACAGGAAGTGAAATGTGATTTGTTCATTATTTCATACAACAGTTTAGACTATATCTTGACACAAGAT
GCTATGTATTTCAGATCTCCATAAAGCAGTTCCGTTTGGTTCTCACTTCTCAGCTTGTCACTTGAACTAAAATTGTCCCAATTAGTCCTTCTTGT
CGACATCAGCCTCAGATTTGACTACAGATTCAACAGCAGCAGTCTCTGAAGGGGCATCAGCACCAGCCTCGGAACCTTTTGACGGACCATCATAT
TCCGATGGCTTGGCGCTCCCTGAAGCATCATCCTCGCCTGGCTTAGCTTCACCATCAGTAGTTGCTTCAATAGTTTCGTCATTAGCTTGCCCATC
ATTTACTGGCACTGCCTGCTTCACAGTACCAACTTTGACATATTTGCTCATGAATTTGTACTCCCAATCTTGCAAGGCATCAAGCTCAAATGCAC
CAAGGCCAGAAATATCCCCTGTGAGATCTTTTTCCTCAAAGGACAGCTTGGCAAGAGCTCTACTAGCATCCTTTCCAGCAAACAATGCATAAGGT
CCCCCAGGTCCATAAAACATTCTGCTCTGAGAAACATCATAGATCTGACCCTTAATAGCCATCAACAGAGGCTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539877] | SGN-U579794 | Tomato 200607 | Build 2 | 44 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340752 [Download][View] | Facility Assigned ID: TUS59N21_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0008 | Quality Trim Threshold: 12.5 |
Working
