EST details — SGN-E540501
| Search information |
| Request: 540501 | Match: SGN-E540501 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190593 | Clone name: TUS-60-M23 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C76488 [cLES-18-D12] | Trace: SGN-T101613 | EST: SGN-E289171 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190593 [TUS-60-M23] | Trace: SGN-T341374 | EST: SGN-E540499 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540501 | Length: 753 bp (912 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540501 [] (trimmed)
AGTAAATCCAAAATGTATTCAAGTAATCGCACGGAATAAAGAATCATACAAATAGGCTAACTATATACATACAGGTAAACCTAGATGTGTTTCAT
TAACTTGCTTGCATACATAATGTGATCCAATGGAGAGGTAGTAACAATGGGGACAACTAGCAAATCGAAACCCCTGTTGAGAATGACTCAAAATA
TACTGCGGAAGTAGAAAGATTAAAAAAACTATCATTGCCGGTAATAGCCACTCTGGTGGGGAGGGAACTTTTAGCGTCAATTGGTAGCACGACAT
CTAGGCAATTTCCTAAATCATCTGTAACGGCTGATTTTGAAGAGCAAAATTGTGTCCAAGTGATTGTTGGTTCTTTGTACTTGAAGGATGCGGAG
GAGGTTACTAAAGTTATTCCAAATGCAAAAGCAATTCAGCTTGACATTACGAGTCACGAGTCTCTTTCTAGCTGGATCGCAGAGGTTGATGTTGT
CATCAGCTTACTGCCTCCTAGCTGCCATGGTGTTATAGCAAAGGCATGCATTGAGCTGAAGAAACATCTCGTCACGGCTAGCTACGTTGATGATT
CTATGTTAAAGCTAGACCAAGATGCAAAATCTGCTGGAATTACTATTCTTGGTGAAATGGGCTTGGACCCAGGAATAGATCATATGATGGCGATG
AAAATGATCAACGAAGCCCATGCAGCAAAGGGAAAGATCAGGTCTTTCGTTTCTTACTGTGGTGGTCTTCCCCTCTCAGCTGCTGCCA
TAACTTGCTTGCATACATAATGTGATCCAATGGAGAGGTAGTAACAATGGGGACAACTAGCAAATCGAAACCCCTGTTGAGAATGACTCAAAATA
TACTGCGGAAGTAGAAAGATTAAAAAAACTATCATTGCCGGTAATAGCCACTCTGGTGGGGAGGGAACTTTTAGCGTCAATTGGTAGCACGACAT
CTAGGCAATTTCCTAAATCATCTGTAACGGCTGATTTTGAAGAGCAAAATTGTGTCCAAGTGATTGTTGGTTCTTTGTACTTGAAGGATGCGGAG
GAGGTTACTAAAGTTATTCCAAATGCAAAAGCAATTCAGCTTGACATTACGAGTCACGAGTCTCTTTCTAGCTGGATCGCAGAGGTTGATGTTGT
CATCAGCTTACTGCCTCCTAGCTGCCATGGTGTTATAGCAAAGGCATGCATTGAGCTGAAGAAACATCTCGTCACGGCTAGCTACGTTGATGATT
CTATGTTAAAGCTAGACCAAGATGCAAAATCTGCTGGAATTACTATTCTTGGTGAAATGGGCTTGGACCCAGGAATAGATCATATGATGGCGATG
AAAATGATCAACGAAGCCCATGCAGCAAAGGGAAAGATCAGGTCTTTCGTTTCTTACTGTGGTGGTCTTCCCCTCTCAGCTGCTGCCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540501] | SGN-U577473 | Tomato 200607 | Build 2 | 62 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341376 [Download][View] | Facility Assigned ID: TUS60M23_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0041 | Quality Trim Threshold: 14.5 |
Working
