EST details — SGN-E540508
| Search information |
| Request: 540508 | Match: SGN-E540508 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190597 | Clone name: TUS-60-N3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C76753 [cLES-19-A23] | Trace: SGN-T101811 | EST: SGN-E287754 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190597 [TUS-60-N3] | Trace: SGN-T341381 | EST: SGN-E540506 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540508 | Length: 624 bp (852 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540508 [] (trimmed)
CAAATTTAGAGAAAAATGGCACCAAAATCTGAGAAAAAGCCCGCAGAGAAGAAGCCAGCTGAGAAAACCCCTGTAGCCGAGAAAGCTCCGGCGGA
GAAGAAGCCAAAGGCTGGGAAGAAGCTCCCAAAGGATGCTGCCGCCGGTGACAAGAAGAAGAAGAGGTCGAAGAAGGCTGTTGAGACTTACAAGA
TCTATATCTTCAAAGTTCTGAAGCAGGTTCATCCTGATATCGGTATTTCAAGCAAAGCTATGGGTATCATGAACAGTTTCATCAATGATATCTTT
GAGAAACTTGCTCAGGAAGCTTCCCGACTTGCCCGCTACAACAAGAAGCCTACTATAACTTCTCGGGAAATTCAGACGGCTGTTCGATTGGTCCT
TCCTGGTGAATTGGCTAAGCATGCCGTCTCTGAAGGCACAAAGGCTGTTACCAAATTCACTAGCTCTTAAGAATTTGAATATCTTTACTGTGTTA
GGGTTTGATGATAGGTGTAAAAACAGTTCCTTGTAGTTGTACGCATCTTGTGTTATGTGGATTGCTAATCAATCATCTATGAAATTTGGGTTGTT
AATTGAACTCTTGATCCAAGTTCTTTTTATGATATTTTTGAATTTGGGTTTGTA
GAAGAAGCCAAAGGCTGGGAAGAAGCTCCCAAAGGATGCTGCCGCCGGTGACAAGAAGAAGAAGAGGTCGAAGAAGGCTGTTGAGACTTACAAGA
TCTATATCTTCAAAGTTCTGAAGCAGGTTCATCCTGATATCGGTATTTCAAGCAAAGCTATGGGTATCATGAACAGTTTCATCAATGATATCTTT
GAGAAACTTGCTCAGGAAGCTTCCCGACTTGCCCGCTACAACAAGAAGCCTACTATAACTTCTCGGGAAATTCAGACGGCTGTTCGATTGGTCCT
TCCTGGTGAATTGGCTAAGCATGCCGTCTCTGAAGGCACAAAGGCTGTTACCAAATTCACTAGCTCTTAAGAATTTGAATATCTTTACTGTGTTA
GGGTTTGATGATAGGTGTAAAAACAGTTCCTTGTAGTTGTACGCATCTTGTGTTATGTGGATTGCTAATCAATCATCTATGAAATTTGGGTTGTT
AATTGAACTCTTGATCCAAGTTCTTTTTATGATATTTTTGAATTTGGGTTTGTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540508] | SGN-U578113 | Tomato 200607 | Build 2 | 59 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341383 [Download][View] | Facility Assigned ID: TUS60N03_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.973 | Expected Error Rate: 0.0001 | Quality Trim Threshold: 12.5 |
Working
