EST details — SGN-E540739
| Search information |
| Request: 540739 | Match: SGN-E540739 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190733 | Clone name: TUS-61-C19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C88184 [cLET-7-F10] | Trace: SGN-T104290 | EST: SGN-E292037 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190733 [TUS-61-C19] | Trace: SGN-T341617 | EST: SGN-E540742 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540739 | Length: 712 bp (895 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E540739 [] (trimmed)
AGCAGGAAACACTCCAAGATGCATTTCAATGAGGTAAATAAAAAAAATTTGGTAACCAAGCCAACATACTTATTTCAATCATGCTATAAAAATTG
CAAAGCAAAATATTACAGGAGTAGAGAAAACCCCTCATCAGCATATAAAACATAGATCTAAGTTCAGTTTGCAAGAAATTAATTCTCTAGTTCAA
CTATTTAAAGAGAATCATCCAACCAATAGAAGCTAACATGCGTTAAGTATAAATCACCACAACTTGATTCCCCGGGTTGATAAAATTCTCTTTAT
GCTAAAAAAGTAGCTACTTGTGAAGTAAAAAAGCCAAGTTCGACTCGACATCTTCATTGGCTTTGTGATCAAATGACTCATCACCAATATATAGG
TCTAGGATTGATCTGCATAAAAGTTTGCTTTGTATGCTTCCCACTTCCTTTCCATCAATTGTTGTGGGGAGTATGTAGTCATGATCTCTGGAGAG
TTCAATGATAGATCCCCGAGGGAATTTAATTTCATCCTTAAACTGGGAAGTGAACCTTTGAAGCAATTCCTTATTATCACATCCCCCAAACTTAT
GTAATCTGCTGCCAACAGATTCTTCGAAAGCACTGCGCACAGAATTAATGCTTAGCCTGCCATAGACTATTTGAAGCCTGATAGTCATGCGTATA
TTGTTTTCCATGAGATGATTTCTCAACTCTTCCTTTTGCTGCAGTTC
CAAAGCAAAATATTACAGGAGTAGAGAAAACCCCTCATCAGCATATAAAACATAGATCTAAGTTCAGTTTGCAAGAAATTAATTCTCTAGTTCAA
CTATTTAAAGAGAATCATCCAACCAATAGAAGCTAACATGCGTTAAGTATAAATCACCACAACTTGATTCCCCGGGTTGATAAAATTCTCTTTAT
GCTAAAAAAGTAGCTACTTGTGAAGTAAAAAAGCCAAGTTCGACTCGACATCTTCATTGGCTTTGTGATCAAATGACTCATCACCAATATATAGG
TCTAGGATTGATCTGCATAAAAGTTTGCTTTGTATGCTTCCCACTTCCTTTCCATCAATTGTTGTGGGGAGTATGTAGTCATGATCTCTGGAGAG
TTCAATGATAGATCCCCGAGGGAATTTAATTTCATCCTTAAACTGGGAAGTGAACCTTTGAAGCAATTCCTTATTATCACATCCCCCAAACTTAT
GTAATCTGCTGCCAACAGATTCTTCGAAAGCACTGCGCACAGAATTAATGCTTAGCCTGCCATAGACTATTTGAAGCCTGATAGTCATGCGTATA
TTGTTTTCCATGAGATGATTTCTCAACTCTTCCTTTTGCTGCAGTTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540739] | SGN-U573192 | Tomato 200607 | Build 2 | 16 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341614 [Download][View] | Facility Assigned ID: TUS61C19_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.944 | Expected Error Rate: 0.0126 | Quality Trim Threshold: 14.5 |
Working
