EST details — SGN-E543007
| Search information |
| Request: 543007 | Match: SGN-E543007 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C192050 | Clone name: TUS-64-J16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C91459 [cLEW-27-L2] | Trace: SGN-T115062 | EST: SGN-E302479 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C192050 [TUS-64-J16] | Trace: SGN-T343883 | EST: SGN-E543008 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E543007 | Length: 834 bp (883 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E543007 [] (trimmed)
CGGGCCCCCCTTTTGATGAATATCAACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACAT
CAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTT
TTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTATTATGGAGG
AACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAG
AGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCAT
GATATTGAATTTGGGTCCCTCGATCAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTAT
AACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCA
ACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCATGGGTCTTCTTACTGAGG
CTGGTGGTCCCGAGTGGCACCCTGCTTCCTCTGAACTTAAGGCTGCCTGCCGTGCTGCTGCTGATCACTGCAAA
CAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTT
TTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTATTATGGAGG
AACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAG
AGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCAT
GATATTGAATTTGGGTCCCTCGATCAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTAT
AACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCA
ACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCATGGGTCTTCTTACTGAGG
CTGGTGGTCCCGAGTGGCACCCTGCTTCCTCTGAACTTAAGGCTGCCTGCCGTGCTGCTGCTGATCACTGCAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E543007] | SGN-U565558 | Tomato 200607 | Build 2 | 17 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T343882 [Download][View] | Facility Assigned ID: TUS64J16_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.982 | Expected Error Rate: 0.0027 | Quality Trim Threshold: 20.5 |
Working
