EST details — SGN-E547319
| Search information |
| Request: 547319 | Match: SGN-E547319 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C194560 | Clone name: TUS-71-C6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C103527 [cLPP-11-C17] | Trace: SGN-T174110 | EST: SGN-E362067 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C194560 [TUS-71-C6] | Trace: SGN-T350391 | EST: SGN-E549516 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E547319 | Length: 781 bp (893 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E547319 [] (trimmed)
GCTTGTTTAGGAATAATTAATTATCCTATTTTTCTCACAAAAATTTTCTAAGGGTAATAGTGGTGTAAAGGATTGACCTTACATCAACTTCCATC
AACTCCCATAACAAATTTTAACAATAAATCCAACTTACCTACCAACCTACCTACCTTATTAATTATAATAATGGAGTATTCTTATAGAACAAAAA
TTAATGTATTATTCATTGTACTCATTCTCTTTGTATTTGCTGCACTTGGGACAGCAACAAACGCTCCGAGGAGGAAACTAACTAAGAAATACAGA
GGCCCGTGTATGGCCGTGAATTCAATTGACAAGTGCTGGAGATGTGATCCTTTCTGGGCTGAAGATCGCCAGAAAATGGCTGATTGTGCGTTGGG
CTTTGGTATCAATGCAATGGGAGGAAAGTATGGTCCATACTACATTGTCACAGATAATTCTGATGATGATGTTGTTGATCCTAAGCCTGGAACTC
TCCGATTTGGGGTGATCCAAAAGGGACCATTGTGGATCACATTTGCAAGAAGTATGAGAATCCGATTGACCAGGGAACTTATTGTTAGTAGCAAT
AAAACAATCGATGGACGTGGAAAATACGTTCACATAGCAAATGGAGCTGGAATTAAGATACAAAGTGCATCTAATATTATTATCTCTAATCTTCG
AATTCACAATATTGTACCTACCGCAGGTGGCTTGCTAAGGGAGTCTGACGACCACCTTGGCCTAAGGGGCGCAGATGAANGTGATGCCATCAGTA
TCTTCAATTCTCATGATATAT
AACTCCCATAACAAATTTTAACAATAAATCCAACTTACCTACCAACCTACCTACCTTATTAATTATAATAATGGAGTATTCTTATAGAACAAAAA
TTAATGTATTATTCATTGTACTCATTCTCTTTGTATTTGCTGCACTTGGGACAGCAACAAACGCTCCGAGGAGGAAACTAACTAAGAAATACAGA
GGCCCGTGTATGGCCGTGAATTCAATTGACAAGTGCTGGAGATGTGATCCTTTCTGGGCTGAAGATCGCCAGAAAATGGCTGATTGTGCGTTGGG
CTTTGGTATCAATGCAATGGGAGGAAAGTATGGTCCATACTACATTGTCACAGATAATTCTGATGATGATGTTGTTGATCCTAAGCCTGGAACTC
TCCGATTTGGGGTGATCCAAAAGGGACCATTGTGGATCACATTTGCAAGAAGTATGAGAATCCGATTGACCAGGGAACTTATTGTTAGTAGCAAT
AAAACAATCGATGGACGTGGAAAATACGTTCACATAGCAAATGGAGCTGGAATTAAGATACAAAGTGCATCTAATATTATTATCTCTAATCTTCG
AATTCACAATATTGTACCTACCGCAGGTGGCTTGCTAAGGGAGTCTGACGACCACCTTGGCCTAAGGGGCGCAGATGAANGTGATGCCATCAGTA
TCTTCAATTCTCATGATATAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E547319] | SGN-U574561 | Tomato 200607 | Build 2 | 121 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T348194 [Download][View] | Facility Assigned ID: TUS71C06_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.973 | Expected Error Rate: 0.0080 | Quality Trim Threshold: 14.5 |
Working
