EST details — SGN-E548806
| Search information |
| Request: 548806 | Match: SGN-E548806 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C192046 | Clone name: TUS-64-J12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C91436 [cLEW-27-J12] | Trace: SGN-T114987 | EST: SGN-E302404 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C192046 [TUS-64-J12] | Trace: SGN-T343876 | EST: SGN-E543001 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E548806 | Length: 614 bp (907 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E548806 [] (trimmed)
TTTCACTGAAATACACACAACTTACATACATATTACATAAACCCAACTCCGGCGCCGGCGCCGGCAGTGAACAGTGGCAAATTAAGAAAAAAAAA
ACTGAAATATAACATCAGCCATAATTTTAAAAAAAGTTAATTAAACTCTAATTACTTCTTGCTTAAAAAATCACCAGCCATCTTAAGATAATCAG
CTCCTTCACTCTTTTTTTCCTCCTCCTTATCTCCTTCAACAACCGGCTCCGGCGCCGGATCCGATTCCGATGCAGGCGCTGGGGCTTTTGCTTCT
TCAGCAACCGGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTC
GTCTAATTTTCCGTATTTCTGTGCAGCGTCAAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATT
GACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTGGGAATCGTCGCCGGCT
CCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTT
ACTGAAATATAACATCAGCCATAATTTTAAAAAAAGTTAATTAAACTCTAATTACTTCTTGCTTAAAAAATCACCAGCCATCTTAAGATAATCAG
CTCCTTCACTCTTTTTTTCCTCCTCCTTATCTCCTTCAACAACCGGCTCCGGCGCCGGATCCGATTCCGATGCAGGCGCTGGGGCTTTTGCTTCT
TCAGCAACCGGTGCGGCGGCCGGAGCCTTATCGCCACCGTACTGGTGGAGATAAGTTTGGGCCTTCTCAACGTACTGTCCAATTCCTTGAGTTTC
GTCTAATTTTCCGTATTTCTGTGCAGCGTCAAGCACATCGGCTGCTGCTTCAGCCACTTTTTTGTTATCGATTTTTTCGGAATCTTTGTTGAATT
GACTCTGAGCAGCATCTGCTAACACTTTAGCACTGGCGAAAAGCTCTGTTGTCGAACCTGATTCCTCGCCGGCTTTTTGGGAATCGTCGCCGGCT
CCGGCGCTCTTAGCCAACGATGACAGAAAATTCATGATTTTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E548806] | SGN-U580879 | Tomato 200607 | Build 2 | 93 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T349681 [Download][View] | Facility Assigned ID: TUS64J12_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.945 | Expected Error Rate: 0.0124 | Quality Trim Threshold: 12.5 |
Working
