Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-C6322

Search information 
Request: 6322Match: SGN-C6322
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C6322Clone name: cLEC-35-B18
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C173885 is on microarray TOM1: SGN-S1-1-6.1.17.7
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
No additional reads found.
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E210545Length: 404 bp (964 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E210545 [] (trimmed) CATCAACACTCTTTACAGCTTGAATGAAGCAGCTCGTTTAGCTTCTGCATCTGGTGGAGGTGGGTTCCCACCTGATGGATTGGCTCCCCGACCAC
GGTCTGGGCCACTGGACCATGGGAATTCTTCATTTATGCAGACTGAAGTGCCCCCTTATGGAACTGATCAGCCAGATATGCTTAAAATTAAGAAT
GGAGATCGTGTTTTGCCATCTGGAATTCCGGAACCTTCACGTAATTCAGCTTCACATTCACCAGATTCTCCGTTTTTTCGACAAGATGGTGAGAG
ACCTCGGTCAAGTAATGCTACAGTGGAAGCTTCTGGTCTGTCAAGATTGCCAGATGGAAATTTACTAACAAAAGATCGGGAAAGCTTACACAGAT
ACAAAAATGATCTCTTTCGAGCTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E210545] SGN-U565359 Tomato 200607 Build 2 4 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T30893 [Download][View] Facility Assigned ID: TCAFJ09TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0095 Quality Trim Threshold: 14.5