EST details — SGN-C65539
| Search information |
| Request: 65539 | Match: SGN-C65539 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C65539 | Clone name: cLEN-10-H3 |
| ||
| Library Name: cLEN | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: red ripe to over-ripe
Microarray: Alias clone SGN-C180809 is on microarray TOM1: SGN-S1-1-2.2.17.11
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180809 [TUS-35-F7] | Trace: SGN-T196384 | EST: SGN-E395058 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E275565 | Length: 654 bp (1018 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E275565 [] (trimmed)
AAAAGGGACAAGAACGTGCTTATGCAAGAGCTGGTTAGGCTCAGACAACAGCAGCAAGCCACTGACAATCAGTTGCAAGGGATGGTGCAGCGCCT
TCAAGGTATGGAGCTGCGACAACAACAAATGATGTCGTTCCTGGCAAAAGCTGTCAACAGGCCTGGATTCTTGGCACAGTTTGTTCAGCAGCAAA
ATGAGAGTAATAAGCGAATAGCTGAAGGCAGCAAGAAACGAAGGATTAAGCAGGATATTGAATCACAGGATCCATCCGTTACTCCTGCGGATGGA
CAGATTGTTAAGTACCAACCTGGGATAAATGAGGCAGCAAAGGCAATGTTGAGGGAGCTTTCAAAACTAGATTCATCTCCTAGATTAGATAACTT
CAGCAACAGTCCTGAAAGTTTCCTGATTGGTGATGGTTCACCACAGTCTAATGCATCTTCAGGTCGTGTTTCGGGAGTCACTCTTCAGGAGGTCC
CACCAACTTCTGGGAAGCCCTTGCTGAATACAGCTTCAGCAATTGCAGGTCAAAGTTTGTTGCCAGCCACTTCTGAGATGCAGTCATCTCATCTT
GGCACATGTTCCGAAATCATCAACAATCAATTGTCAAACATAATCCCGTTGGTAGGAGGTGAAGATTTGCATCCTGGTTCACTT
TCAAGGTATGGAGCTGCGACAACAACAAATGATGTCGTTCCTGGCAAAAGCTGTCAACAGGCCTGGATTCTTGGCACAGTTTGTTCAGCAGCAAA
ATGAGAGTAATAAGCGAATAGCTGAAGGCAGCAAGAAACGAAGGATTAAGCAGGATATTGAATCACAGGATCCATCCGTTACTCCTGCGGATGGA
CAGATTGTTAAGTACCAACCTGGGATAAATGAGGCAGCAAAGGCAATGTTGAGGGAGCTTTCAAAACTAGATTCATCTCCTAGATTAGATAACTT
CAGCAACAGTCCTGAAAGTTTCCTGATTGGTGATGGTTCACCACAGTCTAATGCATCTTCAGGTCGTGTTTCGGGAGTCACTCTTCAGGAGGTCC
CACCAACTTCTGGGAAGCCCTTGCTGAATACAGCTTCAGCAATTGCAGGTCAAAGTTTGTTGCCAGCCACTTCTGAGATGCAGTCATCTCATCTT
GGCACATGTTCCGAAATCATCAACAATCAATTGTCAAACATAATCCCGTTGGTAGGAGGTGAAGATTTGCATCCTGGTTCACTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E275565] | SGN-U580297 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T89437 [Download][View] | Facility Assigned ID: TRRBM38TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0085 | Quality Trim Threshold: 14.5 |
Working
