EST details — SGN-C72215
| Search information |
| Request: 72215 | Match: SGN-C72215 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C72215 | Clone name: cLER-1-I12 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C185035 is on microarray TOM1: SGN-S1-1-8.2.12.18
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C185035 [TUS-46-F9] | Trace: SGN-T199028 | EST: SGN-E397702 | Direction: 5' | Facility: INRA |
| Clone: SGN-C185035 [TUS-46-F9] | Trace: SGN-T199089 | EST: SGN-E397763 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E280364 | Length: 602 bp (953 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E280364 [] (trimmed)
CTTGATATTTCAACTTTCTCAAATATTTCATTTTTTTGGCCGGAAAAACAAGATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGAC
AGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAA
ACTACTTTTGAATCAACTGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATC
GTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGA
CAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAA
GCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGG
TGTGAGTTTTGGTAACAAATTGATTCAAGAAC
AGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAA
ACTACTTTTGAATCAACTGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATC
GTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGA
CAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAA
GCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGG
TGTGAGTTTTGGTAACAAATTGATTCAAGAAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E280364] | SGN-U579837 | Tomato 200607 | Build 2 | 55 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T91918 [Download][View] | Facility Assigned ID: TPRAB54TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.946 | Expected Error Rate: 0.0028 | Quality Trim Threshold: 14.5 |
Working
