EST details — SGN-C74979
| Search information |
| Request: 74979 | Match: SGN-C74979 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C74979 | Clone name: cLES-12-F17 |
| ||
| Library Name: cLES | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C183522 is on microarray TOM1: SGN-S1-1-1.3.2.20
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183522 [TUS-42-G8] | Trace: SGN-T195032 | EST: SGN-E393706 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183522 [TUS-42-G8] | Trace: SGN-T196023 | EST: SGN-E394697 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183522 [TUS-42-G8] | Trace: SGN-T196023 | EST: SGN-E399259 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183522 [TUS-42-G8] | Trace: SGN-T200295 | EST: SGN-E399258 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E286640 | Length: 385 bp (796 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E286640 [] (trimmed)
GGCAGCTTCGGTCCATTGTGCAACAAGAGCAGCCATAAGAGCAGCACGTGAACAGCTCAAACGTTGGGACAAGCTCGACGAGTCTGCTTCAGAAT
TTTATCTAGATGTCCCTGCAATATTACCAGTTGTGAAGACACAGTGTGGCCTGGATTATGCAGAGAAGTTCGTAGAAACTCTGCTGGCTCGAAAA
TCAACGTGTTTCAAATGATACTAAGCTATGTTGCTCGGACTCTCCAAAGAATGTTATCGTACCTGTGTTGATTCCTCTAAAAATACACTACTTTT
TGAGGATCTGACATGCACCGAGTCATGATCATGTCTACTACATCTTTAATATTCACCAAATTAGTACATGACTAAAGAGCTATATATGGTAATTA
CTCAT
TTTATCTAGATGTCCCTGCAATATTACCAGTTGTGAAGACACAGTGTGGCCTGGATTATGCAGAGAAGTTCGTAGAAACTCTGCTGGCTCGAAAA
TCAACGTGTTTCAAATGATACTAAGCTATGTTGCTCGGACTCTCCAAAGAATGTTATCGTACCTGTGTTGATTCCTCTAAAAATACACTACTTTT
TGAGGATCTGACATGCACCGAGTCATGATCATGTCTACTACATCTTTAATATTCACCAAATTAGTACATGACTAAAGAGCTATATATGGTAATTA
CTCAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E286640] | SGN-U582239 | Tomato 200607 | Build 2 | 38 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T100171 [Download][View] | Facility Assigned ID: TPSBU33TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0000 | Quality Trim Threshold: 12.5 |
Working
