EST details — SGN-C78309
| Search information |
| Request: 78309 | Match: SGN-C78309 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C78309 | Clone name: cLES-5-E16 |
| ||
| Library Name: cLES | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178947 is on microarray TOM1: SGN-S1-1-8.4.2.4
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C178947 [TUS-30-H17] | Trace: SGN-T1516 | EST: SGN-E378550 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C178947 [TUS-30-H17] | Trace: SGN-T184685 | EST: SGN-E372245 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178947 [TUS-30-H17] | Trace: SGN-T184686 | EST: SGN-E372246 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E285773 | Length: 480 bp (768 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E285773 [] (trimmed)
TTTTTTTAACACTTGAAATGTTTTTCCAACATTATTCAAATAAAAATTAAGCAATCTGTTTAAGTCTACAAACAGTTCCCACCCTGACCAAAAGA
AGTAACATTATGCATGTTACATGTAACCATTAAAACATATTATGAACCATAATGATGAACAGATCAAAGTAGGTGCTGAAGTCGTAAATGTATTG
CTTACTACATGCGTGACCTTGATGTCGAAGATGTAGCAGCAGGAGCGCTCAAGGGAATGCCCTTTGCTGCTCTCTCTTCCAAGAACTTTGATGGC
TTGAAGGAAATCTTCATCTAGTGTCAAACCTTCAAAAACTTTGTTTGTCATAAATTTTGATCCATATAGTACTAGGAGCAGGGATATAGAGAGGC
ACTTTGATCCATATGGAAAAATACTCAATATAAGGATTAGAAGAAATTTTGCATTTGTTCAATATGAAACTCANGAGGATGCTACTAGAGCCTTG
GATGC
AGTAACATTATGCATGTTACATGTAACCATTAAAACATATTATGAACCATAATGATGAACAGATCAAAGTAGGTGCTGAAGTCGTAAATGTATTG
CTTACTACATGCGTGACCTTGATGTCGAAGATGTAGCAGCAGGAGCGCTCAAGGGAATGCCCTTTGCTGCTCTCTCTTCCAAGAACTTTGATGGC
TTGAAGGAAATCTTCATCTAGTGTCAAACCTTCAAAAACTTTGTTTGTCATAAATTTTGATCCATATAGTACTAGGAGCAGGGATATAGAGAGGC
ACTTTGATCCATATGGAAAAATACTCAATATAAGGATTAGAAGAAATTTTGCATTTGTTCAATATGAAACTCANGAGGATGCTACTAGAGCCTTG
GATGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E285773] | SGN-U565748 | Tomato 200607 | Build 2 | 2 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T98256 [Download][View] | Facility Assigned ID: TPSAR32TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.954 | Expected Error Rate: 0.0137 | Quality Trim Threshold: 14.5 |
Working
