EST details — SGN-C79774
Search information |
Request: 79774 | Match: SGN-C79774 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C79774 | Clone name: cLET-10-B11 |
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Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C183240 is on microarray TOM1: SGN-S1-1-3.3.3.10
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C183240 [TUS-41-K14] | Trace: SGN-T196513 | EST: SGN-E395187 | Direction: 5' | Facility: INRA |
Clone: SGN-C183240 [TUS-41-K14] | Trace: SGN-T199478 | EST: SGN-E398152 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E290729 | Length: 678 bp (880 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E290729 [] (trimmed)
GAAGAAGAAGAAGAAGAAAGAGAGCTTTTCCACATTTTGCATTCCCTGACTGTTTGCTAGTGTGTGCCCCCCCCTCTCTCTCTCCTCATCTCTCT
ACCAATTTTCTCTCCGAAAAAAGGAATAGCATAAGATGGCAGACGGAGAGGATATTCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAG
GCTGGGTTCGCAGGAGATGATGCTCCACGAGCTGTATTTCCTAGTATTGTTGGCCGCCCCCGCCATACTGGTGTGATGGTGGGTATGGGTCAAAA
AGACGCCTATGTGGGAGATGAAGCTCAATCGAAGAGAGGTATTTTAACTCTTAAATACCCAATTGAGCACGGAATTGTCAGCAATTGGGATGATA
TGGAGAAGATATGGCATCATACTTTCTACAATGAGCTTCGTGTTGCCCCTGAGGAGCATCCTGTCCTCCTAACTGAAGCCCCTCTTAACCCAAAG
GCTAATCGTGAAAAGATGACCCAGATTATGTTTGAGACTTTCAATACCCCAGCTATGTATGTTGCTATTCAGGCTGTACTCTCACTGTATGCCAG
TGGTCGTACCACCGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACTGTCCCAATTTATGAAGGGTATGCCCTTCCACATGCCATTCTCC
GTCTTGACTTGGC
ACCAATTTTCTCTCCGAAAAAAGGAATAGCATAAGATGGCAGACGGAGAGGATATTCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAG
GCTGGGTTCGCAGGAGATGATGCTCCACGAGCTGTATTTCCTAGTATTGTTGGCCGCCCCCGCCATACTGGTGTGATGGTGGGTATGGGTCAAAA
AGACGCCTATGTGGGAGATGAAGCTCAATCGAAGAGAGGTATTTTAACTCTTAAATACCCAATTGAGCACGGAATTGTCAGCAATTGGGATGATA
TGGAGAAGATATGGCATCATACTTTCTACAATGAGCTTCGTGTTGCCCCTGAGGAGCATCCTGTCCTCCTAACTGAAGCCCCTCTTAACCCAAAG
GCTAATCGTGAAAAGATGACCCAGATTATGTTTGAGACTTTCAATACCCCAGCTATGTATGTTGCTATTCAGGCTGTACTCTCACTGTATGCCAG
TGGTCGTACCACCGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACTGTCCCAATTTATGAAGGGTATGCCCTTCCACATGCCATTCTCC
GTCTTGACTTGGC
Unigenes |
Current Unigene builds | |||||
[SGN-E290729] | SGN-U580422 | Tomato 200607 | Build 2 | 87 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T104898 [Download][View] | Facility Assigned ID: TMEBM06TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.976 | Expected Error Rate: 0.0048 | Quality Trim Threshold: 14.5 |