EST details — SGN-C80626
| Search information |
| Request: 80626 | Match: SGN-C80626 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C80626 | Clone name: cLET-12-O10 |
| ||
| Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C183468 is on microarray TOM1: SGN-S1-1-7.1.2.20
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183468 [TUS-42-E2] | Trace: SGN-T196013 | EST: SGN-E394687 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183468 [TUS-42-E2] | Trace: SGN-T196013 | EST: SGN-E399239 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183468 [TUS-42-E2] | Trace: SGN-T196129 | EST: SGN-E394803 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183468 [TUS-42-E2] | Trace: SGN-T200283 | EST: SGN-E399238 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E293215 | Length: 555 bp (926 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E293215 [] (trimmed)
TTTGGAGTTCTTCCACGCTACGCAAAGAACGAATCCCTAATCAAGTGGTTCGAGCTTCCTAACTGCTTCATATTCCACAACGCCAATGCTTGGGA
GGAGGGAGATGACGTGGTCTTGATCACTTCCCGCCTGCAGAATCCAGATCTTGACGCGATTAAAGGAACTGAAAAAGAAGAACAGCGTGACGGCT
TCACAAATGAGTTGTATGAGATGAGGTTCAATATGAAGAATGGCGTATCATCACAGAAGAAACTGTCAGAGGCTGCTGTTGATTTTCCACGGATC
AACGAGAACTACACTGGAAGGAAGCAACGCTATGTATATGGAACCATCTTAAACAATGTTGCCCAGATCACAAGAGTTGTCAAATTTGATTTGCA
TGCCGAACCAGAAACTGTAAAAACAAAGCTTGAAGTAGGTGGAAATGTTCCTGGAATTTTTGACCTTGGACCTGGAAGATTTGGATCAGAGGCAA
TATTTGTTCCCCGTCAGCCTGGGACTGAATGTGAAGAGGATGACGGCTACTTAATATTGTTTGTACATGATGAGAACACT
GGAGGGAGATGACGTGGTCTTGATCACTTCCCGCCTGCAGAATCCAGATCTTGACGCGATTAAAGGAACTGAAAAAGAAGAACAGCGTGACGGCT
TCACAAATGAGTTGTATGAGATGAGGTTCAATATGAAGAATGGCGTATCATCACAGAAGAAACTGTCAGAGGCTGCTGTTGATTTTCCACGGATC
AACGAGAACTACACTGGAAGGAAGCAACGCTATGTATATGGAACCATCTTAAACAATGTTGCCCAGATCACAAGAGTTGTCAAATTTGATTTGCA
TGCCGAACCAGAAACTGTAAAAACAAAGCTTGAAGTAGGTGGAAATGTTCCTGGAATTTTTGACCTTGGACCTGGAAGATTTGGATCAGAGGCAA
TATTTGTTCCCCGTCAGCCTGGGACTGAATGTGAAGAGGATGACGGCTACTTAATATTGTTTGTACATGATGAGAACACT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E293215] | SGN-U570698 | Tomato 200607 | Build 2 | 44 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T105678 [Download][View] | Facility Assigned ID: TMEBT89TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0211 | Quality Trim Threshold: 14.5 |
Working
