EST details — SGN-C87790
| Search information |
| Request: 87790 | Match: SGN-C87790 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C87790 | Clone name: cLET-5-N16 |
| ||
| Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C181967 is on microarray TOM1: SGN-S1-1-4.2.10.12
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C181967 [TUS-38-F13] | Trace: SGN-T194449 | EST: SGN-E393123 | Direction: 5' | Facility: INRA |
| Clone: SGN-C181967 [TUS-38-F13] | Trace: SGN-T194697 | EST: SGN-E393371 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E290301 | Length: 515 bp (640 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E290301 [] (trimmed)
AAATGGAGTTCTCTAAGATAACTTCACTTCTTTTCATTTCTATGCTTTTCCTTTCTTCATTCACTCCCATTCTTGGATGTGGCTATTGTGGTAAA
CCTTCTCACAAGCCCAAAAAGCCCAAAGTTCCCACTCCCATTGTCAAACCCCCTGTCGATTTGCCCCCTATCGGAATTCCACCAATCGTGAAACC
ACCTGTTAATTTGCCCCCTATCGGAATTCCACCGATCGTAAAACCACCAGTCAAATTGCCACCTATCGGAATTCCACCAATCGTAAAACCGCCCG
TCATATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTCAAATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTTGAT
TTGCCACCTGTTGGGATTCCACCGGTCACAGTTCCACCAATTGTAAAACCTCCAGTTGATTTGCCACCTATTGGAATTCCACCAGTCACAGTTCC
ACCAGTAATTAAACCATCACCTAAAGGGAAAAAACCTTGT
CCTTCTCACAAGCCCAAAAAGCCCAAAGTTCCCACTCCCATTGTCAAACCCCCTGTCGATTTGCCCCCTATCGGAATTCCACCAATCGTGAAACC
ACCTGTTAATTTGCCCCCTATCGGAATTCCACCGATCGTAAAACCACCAGTCAAATTGCCACCTATCGGAATTCCACCAATCGTAAAACCGCCCG
TCATATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTCAAATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTTGAT
TTGCCACCTGTTGGGATTCCACCGGTCACAGTTCCACCAATTGTAAAACCTCCAGTTGATTTGCCACCTATTGGAATTCCACCAGTCACAGTTCC
ACCAGTAATTAAACCATCACCTAAAGGGAAAAAACCTTGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E290301] | SGN-U579003 | Tomato 200607 | Build 2 | 74 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T103749 [Download][View] | Facility Assigned ID: TMEAT80TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.948 | Expected Error Rate: 0.0008 | Quality Trim Threshold: 14.5 |
Working
