EST details — SGN-E301180
Search information |
Request: 301180 | Match: SGN-E301180 |
Request From: web user | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C90456 | Clone name: cLEW-22-J5 |
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Library Name: cLEW | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C191803 [TUS-63-P9] | Trace: SGN-T343452 | EST: SGN-E542577 | Direction: 3' | Facility: INRA (MWG) |
Clone: SGN-C191803 [TUS-63-P9] | Trace: SGN-T343455 | EST: SGN-E542580 | Direction: 5' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E301180 | Length: 642 bp (900 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E301180 [] (trimmed)
GTTTTATATATCATGCAGACAAGACGAGTTGACATGATCATATGCCTTTTCTAGATCTAGTTTACATGCTACCCCTCTCTGCTACCTTTTCAAAT
ATATTATCCACAGCTTCATTGGCGACCATGGCCGCATCAGTAATCTGTCTACCTAGTATACATTCTGATTTGGTGAAATCAGCTTACTAATAATC
TGTTTACGTTTTTCTACAATAGCTTAGCTATGATATTACGTACACTTCCCAATAGGTTGATAGGTCTGGAAATTTTCACCTCAGCTGCTACCGTC
TTCTTATGTATTAAGTCAATGAAAAAAGAATTCAAACATTTGTTTTAGGTGCTTTCAGATGAAAATTCTCAACTAGCCTCCATACACCCATTTTG
GCCATATTCTAGCATTTCCTAAGAGAAACAAGTTAAAACCATTTAGCAAGAAGCCTTAGGCCTTGTTTGTTTGCACTTAATAAACTAAATCTTTA
ATCATTCAGGTTCCAATCATTAAGACCTCATTTGTTTGCACTTAATAAATGTATGAATCTTAATCATTCAGATTCAGCCCATTAAGTGCTTTTGG
TTTTAAAGGTCTTAATCTTGATCATTGAGATTCACCCTATTACGTCCATTTGTTATTTTTTTTTTAAAAACC
ATATTATCCACAGCTTCATTGGCGACCATGGCCGCATCAGTAATCTGTCTACCTAGTATACATTCTGATTTGGTGAAATCAGCTTACTAATAATC
TGTTTACGTTTTTCTACAATAGCTTAGCTATGATATTACGTACACTTCCCAATAGGTTGATAGGTCTGGAAATTTTCACCTCAGCTGCTACCGTC
TTCTTATGTATTAAGTCAATGAAAAAAGAATTCAAACATTTGTTTTAGGTGCTTTCAGATGAAAATTCTCAACTAGCCTCCATACACCCATTTTG
GCCATATTCTAGCATTTCCTAAGAGAAACAAGTTAAAACCATTTAGCAAGAAGCCTTAGGCCTTGTTTGTTTGCACTTAATAAACTAAATCTTTA
ATCATTCAGGTTCCAATCATTAAGACCTCATTTGTTTGCACTTAATAAATGTATGAATCTTAATCATTCAGATTCAGCCCATTAAGTGCTTTTGG
TTTTAAAGGTCTTAATCTTGATCATTGAGATTCACCCTATTACGTCCATTTGTTATTTTTTTTTTAAAAACC
Unigenes |
Current Unigene builds | |||||
[SGN-E301180] | SGN-U600624 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T114078 [Download][View] | Facility Assigned ID: TRDDI51TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.946 | Expected Error Rate: 0.0044 | Quality Trim Threshold: 14.5 |