EST details — SGN-E302479
| Search information |
| Request: 302479 | Match: SGN-E302479 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C91459 | Clone name: cLEW-27-L2 |
| ||
| Library Name: cLEW | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C192050 [TUS-64-J16] | Trace: SGN-T343882 | EST: SGN-E543007 | Direction: 3' | Facility: INRA (MWG) |
| Clone: SGN-C192050 [TUS-64-J16] | Trace: SGN-T343883 | EST: SGN-E543008 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E302479 | Length: 585 bp (924 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E302479 [] (trimmed)
GGTTAGGCATCACACCGATATTGCCCCTTCCGGGACCCCCGTTGGATGGGAATCTGGGACCAACACCTCTAGCTCAGGTGGTAGAGGAACCAAAT
GATGTTAAGATGGAAGAGAATGAAGAGGAAAACAATAAGGACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCC
CCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTG
GCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCT
GGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTGCTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCA
ATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAAGGATCACAGGTGAAGAAATGGATATCA
TAAAGCTGACATCAC
GATGTTAAGATGGAAGAGAATGAAGAGGAAAACAATAAGGACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCC
CCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTG
GCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCT
GGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTGCTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCA
ATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAAGGATCACAGGTGAAGAAATGGATATCA
TAAAGCTGACATCAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E302479] | SGN-U562869 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T115062 [Download][View] | Facility Assigned ID: TRDED61TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0139 | Quality Trim Threshold: 14.5 |
Working
