EST details — SGN-E373539

Search information 
Request: 373539Match: SGN-E373539
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C179426Clone name: TUS-31-L16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C179426 is on microarray TOM1 spot ID 1-1-1.4.2.13 [Order] [Tomato Microarray Database]
See unigene SGN-U577253 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C179426 [TUS-31-L16] Trace: SGN-T185678 EST: SGN-E373540 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E373539Length: 619 bp (912 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E373539 [] (trimmed) AAACAGCCCAAAAAAGCTGGTTTTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACCCCTCAAAAAA
AAAAGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAAAGGGGTAAAAAAAATTATTTGACAGTAAC
TTTGCCAACCATTCCACCTCCCTGGGGAGGGGCACAAAAAAAAGTGTAAGTTCCTTTTTCACTCAAAGGGACCCTGTATGTTTTTCCTGCTGCAT
TCAAAAAATCCTTTTCAAACATGGAAATTTTACTACCATCCACCCCAGCTGGGATTTCATTTTCATCAAATACAACGTTGTGGGGGAACCCTGCA
TTGTTCTTGAATGTAATTTTCTCACCACCCCTAACCCTGAAGTTTCCAGAAATAAAAGCTAAACTCCCATCATCACCACCAACCAACACTTAAAG
TGCCATGGCATTGCTAGCAAGCATCGCCCTAACAGCGGGGGCAGCAACCACAGCACCGACATTTTTCAAAAACCCCTTCACAGTCAATCTGGCAA
CTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTTTGGAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E373539] SGN-U577253 Tomato 200607 Build 2 198 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T185677 [Download][View] Facility Assigned ID: FA0AAD19DF08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.933 Expected Error Rate: 0.0204 Quality Trim Threshold: 12.5