EST details — SGN-E390317

Search information 
Request: 390317Match: SGN-E390317
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173935Clone name: TUS-17-G21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173935 is on microarray TOM1 spot ID 1-1-4.3.17.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C6426 [cLEC-35-G15] Trace: SGN-T30775 EST: SGN-E210427 Direction: 5' Facility: TIGR
Clone: SGN-C173935 [TUS-17-G21] Trace: SGN-T191433 EST: SGN-E390107 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E390317Length: 685 bp (872 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390317 [] (trimmed) AAGCAGAACAATACTTTTTCTACTTACTGAACATATCTGTTGACAGTATGAGAGCACTGATTAAGTACTACACACAAGCACACATGCACATTTAA
TTGGAAACTTCTTGAAGTTGGAGTTCAACCAAGATCGGGGACAGTAAAATACTCATCATCATCTGGGATTTCAATTCTGGACTTCTTGTAAGGCA
TTTGATATTTGGTTGTCCTGTAAATATTTGTATTGCTCGACTGAGGTACTGATAGCTCGGGCACTTCAGCTGCTGTTTGTTCACCAAAGAGATCA
ATGCCCCCTAACCACTCAAATTCACCAAGCTCAAGTAGATCCTTCTGTATTAAATTGAAACAACCAATATATAGGTTATTCATTACATATTAAAT
GAACAGACAATGACACCGTAATATACTGAATCAATGGTCACCACAGTTTCACATATTAAACTGACACCGGAATATACCCAAGGCCAACTTCGTAT
ATACATGTAATGGTGTCATAAAATGTCTCCCTATGTATCGAGGAATCTAAGGAAGTCGTTTTGCATATTTGAGTGTTTCAAATTCAAGTTCAATG
CTATGCATAAGCTGCATTACCAAGAAAATCGATAGCTTCTCATCTAGAGAAGTCCTCTATACGTCAATCCGCCAGCCACCAACCCAAGTGGTAGA
AAATATAGGATACTTGCAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390317] SGN-U587569 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191643 [Download][View] Facility Assigned ID: FA0AAD5AD11FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0050 Quality Trim Threshold: 14.5