EST details — SGN-E391925

Search information 
Request: 391925Match: SGN-E391925
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C177648Clone name: TUS-27-B14
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C177648 is on microarray TOM1 spot ID 1-1-3.2.6.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C46840 [cLEI-13-N24] Trace: SGN-T82526 EST: SGN-E268465 Direction: 5' Facility: TIGR
Clone: SGN-C177648 [TUS-27-B14] Trace: SGN-T193000 EST: SGN-E391674 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E391925Length: 621 bp (855 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E391925 [] (trimmed) ACCACTATTAATTAAAAAAAACACCTTATTGGAACATTTAATGTGTGCTACTCCTTTTCTTCTAATGCCACTAATTTAATGTAAGGTCCCATTAT
AAAAAGTAAGGCTTCTTATTAATAAATAAATCTCAATAATTCCAAGTACCAACTACTCTGATTAAAAAGTATTTTAAAAATAACAATAAAAAATC
GTCTATCTATCTCTACGGGCTAGTAACAAAGTCTATTATTGTAACAATTAAGTGGTTTGATCAACATCACTTATTCTGAATCAAATAATTAAGTG
ATAGTTACGTATATTAAAGTACATGTTATATTTAATAATAACGAACTAAGTGTACGTACCATATCGGCGGTTCCATCTCCGGCAATCTTAACAAA
CCCCGCCGGTGATGACATGACATTTCCGGTGCCGGAATCGGAATCTCCATTACCCAATGAAACAACCAATAAATCTTCAACTCCATTAGCAAATG
GAAACTCTTGTTTGTTATTAAGGACATGTGTAATCGCGGCAGCCGTTGGATTAGTCATCGCTATTCCACCACCTACGGCTGTGATCTTCGAACGA
CCATCAATTGACTTCAAATCAACCGCACGATCAGCCATCGTGGCCCCACAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E391925] SGN-U587185 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193251 [Download][View] Facility Assigned ID: FA0AAD15DA07FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.943 Expected Error Rate: 0.0064 Quality Trim Threshold: 14.5