EST details — SGN-E393487

Search information 
Request: 393487Match: SGN-E393487
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182090Clone name: TUS-38-K16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182090 is on microarray TOM1 spot ID 1-1-1.3.10.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7859 [cLEC-40-H9] Trace: SGN-T32183 EST: SGN-E210119 Direction: 5' Facility: TIGR
Clone: SGN-C182090 [TUS-38-K16] Trace: SGN-T194601 EST: SGN-E393275 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393487Length: 430 bp (893 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393487 [] (trimmed) GATCGAGGATTAAGACGAATTATTCATTAGGTAAATTCTCAAAACATTTTCATGCATAATCTTAAACAATTACAACACATACTTCAAATTAAAAG
CTTAATCTCCCAACAAACCAAATATACTTTGACAAACACAGACATTATTAAAAAAGGGACTTTCATCAAACACTTGTTTAACCAGAGATGTCAAT
GGCCTTCACCTCAGATTTCTTCTTCTCTTCTTCTTTTGGAACAATCACTGTCAGCACTCCATTCTCCATCGCTGCCTTTATTTTTCCCGTCTTTG
CATTCTCCGGCAACCTGAATCTTCTTAAAAACTTACCGCTGCTCCTCTCCATACGGTGCCTTTTATCGTTCTTCTCTTCTTTCTCTCTGCTTCGC
GCGCGCCTAATCTGTAAAATCCTTCCTTCTTCTACTTCAACTTGAACTTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393487] SGN-U580473 Tomato 200607 Build 2 18 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194813 [Download][View] Facility Assigned ID: FA0AAD26BF08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.923 Expected Error Rate: 0.0072 Quality Trim Threshold: 14.5