EST details — SGN-E395336

Search information 
Request: 395336Match: SGN-E395336
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173417Clone name: TUS-16-B7
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173417 is on microarray TOM1 spot ID 1-1-2.2.18.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C2513 [cLEC-16-E21] Trace: SGN-T26981 EST: SGN-E205092 Direction: 5' Facility: TIGR
Clone: SGN-C173417 [TUS-16-B7] Trace: SGN-T196663 EST: SGN-E395337 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395336Length: 610 bp (874 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395336 [] (trimmed) GAGCAAGATAATTAGGCATTTCATTTTATTTTTGTCTCCATAGTGAAACTGAACATTTGAGCATACAAAATACAAATATGAATTTAGAGCAATTT
GCTAATAAAATAAGAATTCAGCTATATGAAGAGAGACAAAAAAGTCTTATTATAATTCTTACTACAAATAAGTATAGAACTAACACATCGAGCTC
CGATGCTTCAGTAATTGAATTCTTGTCTATTCTCGTGACTGCAGAAGGGAATCTCACAACTTTCACCACAAATTGTGACATTATTTCACATGTTT
AGAGTTCAATTGAGTTTTGCTGATGATCTTCTTTTGTTTAGCAGAGGAGATGCCCAATCAACTGTCCTATTGTAAGAATGCTTTCAGCAATTTTC
ACAAGCATCAGGTTTAATAGCAAATCAGGCCAAAAGTTGTGTATATTTGGGTGGAGTGTCAGAACAAGAACAACATTTGATATTGCAACATACAG
GCTTCGTAAAAGGAAATTTACCATTTAGATATCTTGGAGTCCCTCTAAGCTCCAAAAATTGTCAATAAGCCAATGTCAACCACTTCTAGAACGGA
CGCTAGGAAGAAAAGACACATGGGACTACGAAATTTCTAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395336] SGN-U594402 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196662 [Download][View] Facility Assigned ID: FA0AAD4CA04FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.942 Expected Error Rate: 0.0017 Quality Trim Threshold: 14.5