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EST details — SGN-E395678

Search information 
Request: 395678Match: SGN-E395678
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173978Clone name: TUS-17-I16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173978 is on microarray TOM1 spot ID 1-1-1.1.17.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C6500 [cLEC-35-J7] Trace: SGN-T30868 EST: SGN-E210520 Direction: 5' Facility: TIGR
Clone: SGN-C173978 [TUS-17-I16] Trace: SGN-T197005 EST: SGN-E395679 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395678Length: 660 bp (863 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395678 [] (trimmed) CATAACCAAAATTATGATTCAAGATCCATGTGGCTAATATCAATAAAAGCAAAATATACAAATACTTTTTTACCAAAAAAAAGGTGAAACACATG
CACACATATTCCAATCTTCAAAAATAAAAGATTTCTATAACATTAGTAAGTTAACATCGACTATTCAGATCCTATGTCAAGTCTTCACTACTGCT
TTCATCGCCTTCTTCAATTTCATCACCTTGCTCGGCCCCTTGAACATAAGTAAATTCTATTGGTGAAGGAATGAACAATGCTTCCATTATGATAG
GATTAATTAATCCGGCATTCTTAAGTTGTGCAATTACATATTCAGCTATAAGAAAATACAAGAAATATAATTAGCAATCATGGATACATTTAATA
GGTTTCTAAGCTTGTACATTACCTTATTCTTTAGGTTGATCATCTGTTTAAGGAGTGACATAATTCATTTGCACTTGATCATCGAAATGTATCTC
TCCGACAGGCTGCTCCTTGACATGCTGCTTCTCTATAGAATTGTCTATTTGCTTCAGATTATGGGGCTACTGTTTGTTGTACTCTTATTAATTTA
AGCATATGTCCTTTCTCGCACTCTATAGCTTGAACAATTTCATTTATTGTCAATAACCGCCGTTTCTTATTTGCCAAGAATGATAATGAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395678] SGN-U586646 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197004 [Download][View] Facility Assigned ID: FA0AAD5BE08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.938 Expected Error Rate: 0.0060 Quality Trim Threshold: 14.5