EST details — SGN-E395779

Search information 
Request: 395779Match: SGN-E395779
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173994Clone name: TUS-17-J8
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173994 is on microarray TOM1 spot ID 1-1-1.2.18.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C6527 [cLEC-35-L17] Trace: SGN-T30703 EST: SGN-E210355 Direction: 5' Facility: TIGR
Clone: SGN-C173994 [TUS-17-J8] Trace: SGN-T197106 EST: SGN-E395780 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395779Length: 699 bp (871 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395779 [] (trimmed) GAAACATATATACTTCTTAAATTTGTACAAGAAGCATACATATTCTTTCATCCCAATGAACTCAAGATGAAGGACTAGGCAAGACACTAGGACTA
GGCAAACAACTAGGCCTAGGAAAATTAATTTCTCTATTAAGATTGAGACTACTCAAATCTTTACCCTTACTAGTATACAATTTCTTAATATTAGC
ACTTTGTTCACTTAACAACTTCTCAAGACTCCTCTTAGCATTTGGTCTAAATGATTCATTTGATCCCAAATATCCATCCACCAAATGCAAATATG
CTTCCAAGTCATGACAACATGCAACATCTGCATCAGGTTTCAAAAATGGAGACTTTGTTGTGTCAACTCTCAATTCTGTGCCAACATGTGAATAA
GCCCATGGCATGCTATTGTCAAGCAAGTTCAACACCCCCGAGGCACCGGTGTCCCTTAGTTTCTTGTCTATTGCTTCGCTCACAAACATCCCTGG
AACTTTAGTGATCACGTCTTGCTTGTTCACGATACGTAACACCTTAACGTTTTTGGACTCCAGACGATTGGCGAAACCTTTGTTGCCTACTCGAG
GACCACCAAAGGAAAAAACTGCGACTGGTGGAGCGTCAGGTGAACACGTACTTATGTCATCTGCTACTAGTAAAGCCAATGCAGCACCAAGACTA
TGCCCTGTTACTGTTATACTTAGTGACTCCCCTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395779] SGN-U565342 Tomato 200607 Build 2 23 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197105 [Download][View] Facility Assigned ID: FA0AAD5DE04FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0036 Quality Trim Threshold: 14.5