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EST details — SGN-E396881

Search information 
Request: 396881Match: SGN-E396881
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184432Clone name: TUS-44-M6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184432 is on microarray TOM1 spot ID 1-1-3.1.16.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C21431 [cLED-34-A11] Trace: SGN-T57311 EST: SGN-E243537 Direction: 5' Facility: TIGR
Clone: SGN-C184432 [TUS-44-M6] Trace: SGN-T198206 EST: SGN-E396880 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E396881Length: 615 bp (859 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396881 [] (trimmed) GCCTCTCCTATCCATTCTTCTCACTCAGATCGATCTATTCGATCAAAGGGTCAAGGAGATATAAAGATAAACAGGATTGAGTACAACACGAATCG
ACCGGCACCATTCTGCGATACAATAAATGGATTACTGAGCAAGGCATATGAACTTTCCGTTCTATGTGATGCTGATATTGCTCTCGTTGATTTCT
CTACTCGTGGTCAACTCTATGAGTACTCTAACACCAATGTAAAGGCTACTATAGAACGATACAATAAGGCAACAGCATAAACGTCTAGTGCGTAC
ACTACTCAAGAGCTCAATGCACAGTTTTACCACCAAGAATCAAAGAAGTTGCGGCAACAGATACAAATGATGCAGAACACAAATAGGCATCTGGT
GGGTGAAGGGCTGAGCTCTTTGAATGTGAGGGAACTGAAGCAATTGGAGAACAGACTTGAACGAGGCATTACAAGAATTAGGTCCAAAAAGCATG
AAGCAATACTAGCTGAGACTGAGGATTTGCACAAGAGGGAAATTCAACTTGAACAGGAAAATGCATTCCTTAGATCAAAGATAGCAGAAAATGAG
AAGTTGCCGGAACTAAGCATGATGCCATCTGGTGGGGAAAAGTTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396881] SGN-U596818 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198207 [Download][View] Facility Assigned ID: FA0AAD32BG03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.967 Expected Error Rate: 0.0259 Quality Trim Threshold: 14.5