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EST details — SGN-E397630

Search information 
Request: 397630Match: SGN-E397630
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185199Clone name: TUS-46-M5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185199 is on microarray TOM1 spot ID 1-1-4.1.12.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24197 [cLED-7-H5] Trace: SGN-T50575 EST: SGN-E232066 Direction: 5' Facility: TIGR
Clone: SGN-C185199 [TUS-46-M5] Trace: SGN-T198957 EST: SGN-E397631 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E397630Length: 528 bp (856 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397630 [] (trimmed) GAGCCAAAACTTATATGTTTTTTTTAAAAAAACCAAAGGGCAAGGGAACAAAGTAATTCCAAAAAAAATTAATCAACCAATTGAATTTTCCCTAA
ACCTAGCTGGGGCCTATAAACATATAAAATTTAAAATTTTGATCCCCCCCCCAAGGAAAAAAAAAAATTACATAAAATTTGTCTACAAATTTCGT
AAATCCCATCAATTAAAGTCCCATTAAGGTTGGAAAAATTCAAATTTTGGAGGGAAAAAAAGCCAAAATTTCTTCCCCGGAGGGGGACCCCCCCC
CCCATCTTCCCCGGAACCAAATCCAGGCCAAAATTCCGGGAACCCCGGAATGTTCAAGTCAAAATCCCGGGGGGGGATTGTTGAACCCCCCCCCC
CCGACAACGTAACCCCAACCCTAGCGCTAATGCTACTGTTAGCGTTAGCATTTCCGTTACCGTTACGGTTACCACCGGCGGGGCCAAATTCCTGC
ACCCCGGGGGATCCCCTATTTCTAAAGGGGGCGCCCCCGGGGGGGAGCCCCAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397630] SGN-U592086 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198956 [Download][View] Facility Assigned ID: FA0AAD34AG03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.884 Expected Error Rate: 0.0186 Quality Trim Threshold: 12.5