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EST details — SGN-E397809

Search information 
Request: 397809Match: SGN-E397809
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C177880Clone name: TUS-27-L6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C177880 is on microarray TOM1 spot ID 1-1-3.4.6.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C64184 [cLEM-5-G11] Trace: SGN-T84986 EST: SGN-E271181 Direction: 5' Facility: TIGR
Clone: SGN-C177880 [TUS-27-L6] Trace: SGN-T197838 EST: SGN-E396512 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E397809Length: 597 bp (871 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397809 [] (trimmed) AGTATTAACAATTTCTCCACATTTTACTTCATATTTGTCCAAAACATATTTAAGAAAAGTTGTTACAATGTTCAAGAATGAACAATGATTCATAC
AATTTAGTGTAAACTTACTTGGAATCTTGCAAAGAGATGACAGTTTCAAAAGCACTAGCCAATGCTTTAACTCTATTCTTCCTTTGCTCTCTAAG
TTTACTTGCTGTTTCTTCAATAACATCATTAGATGATACTACAATTTCCTTCTTATGTACCAAATGTGTGTAAGCCTTTGCAAATGTCATTGTAG
TTGTGCTAACTTTGTTGTTGTTTTCTTCCTTTTCTTTGTTGTTTCTTCCTTCACTTTCTTCTCGATCAATCTTCAAATCCAATTCTTTTCCCTCA
TCTTTCTTTTGTTCACAATCGTCCAATGGTGTTTCATTTTCTTGATCTTTCTCTTTCTCTTCTTGATTCTCGGTTTCTTGTTTTTCGATCTCTTC
AACATCATGATTACTAGGCTCAACATTCTTGATTTGTCCTACTTCTTTATGGTTTTCTATGATGTCCAATTGTTGAACTTCTTTTGCTACTTCCC
ATAATCTTGATGACTTCCTGATTCTCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397809] SGN-U603753 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199135 [Download][View] Facility Assigned ID: FA0AAD15DF03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.899 Expected Error Rate: 0.0062 Quality Trim Threshold: 14.5